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TuftsBCB · May 11, 2024 · cde0f4a · cde0f4a
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diff --git a/_sources/quick_tour.md b/_sources/quick_tour.md
@@ -162,11 +162,9 @@ You can also apply the clustering information to your visual.
 
 ```python
 >>> gene_group_dict = dict()
->>> gene_group_dict = {g:[
->>>     'red', 'blue', 'yellow', 'green'
->>> ][c] for g, c in zip(nxg.nodes(), node_labels)}
+>>> gene_group_dict = {g:str(c) for g, c in zip(nxg.nodes(), node_labels)}
 >>> g = grn.visualize_local_neighborhood(
->>>     'HIST1H1D', k=40, node_color_dict=gene_group_dict
+>>>     'HIST1H1D', k=40, node_group_dict=gene_group_dict
 >>>     )
 >>> g.show('view.html')
 ```

diff --git a/quick_tour.html b/quick_tour.html
@@ -498,11 +498,9 @@ <h3>(Optional) Step 3. Node clustering<a class="headerlink" href="#optional-step
 </div>
 <p>You can also apply the clustering information to your visual.</p>
 <div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">gene_group_dict</span> <span class="o">=</span> <span class="nb">dict</span><span class="p">()</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="n">gene_group_dict</span> <span class="o">=</span> <span class="p">{</span><span class="n">g</span><span class="p">:[</span>
-<span class="gp">&gt;&gt;&gt; </span>    <span class="s1">&#39;red&#39;</span><span class="p">,</span> <span class="s1">&#39;blue&#39;</span><span class="p">,</span> <span class="s1">&#39;yellow&#39;</span><span class="p">,</span> <span class="s1">&#39;green&#39;</span>
-<span class="gp">&gt;&gt;&gt; </span><span class="p">][</span><span class="n">c</span><span class="p">]</span> <span class="k">for</span> <span class="n">g</span><span class="p">,</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">nxg</span><span class="o">.</span><span class="n">nodes</span><span class="p">(),</span> <span class="n">node_labels</span><span class="p">)}</span>
+<span class="gp">&gt;&gt;&gt; </span><span class="n">gene_group_dict</span> <span class="o">=</span> <span class="p">{</span><span class="n">g</span><span class="p">:</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="p">)</span> <span class="k">for</span> <span class="n">g</span><span class="p">,</span> <span class="n">c</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">nxg</span><span class="o">.</span><span class="n">nodes</span><span class="p">(),</span> <span class="n">node_labels</span><span class="p">)}</span>
 <span class="gp">&gt;&gt;&gt; </span><span class="n">g</span> <span class="o">=</span> <span class="n">grn</span><span class="o">.</span><span class="n">visualize_local_neighborhood</span><span class="p">(</span>
-<span class="gp">&gt;&gt;&gt; </span>    <span class="s1">&#39;HIST1H1D&#39;</span><span class="p">,</span> <span class="n">k</span><span class="o">=</span><span class="mi">40</span><span class="p">,</span> <span class="n">node_color_dict</span><span class="o">=</span><span class="n">gene_group_dict</span>
+<span class="gp">&gt;&gt;&gt; </span>    <span class="s1">&#39;HIST1H1D&#39;</span><span class="p">,</span> <span class="n">k</span><span class="o">=</span><span class="mi">40</span><span class="p">,</span> <span class="n">node_group_dict</span><span class="o">=</span><span class="n">gene_group_dict</span>
 <span class="gp">&gt;&gt;&gt; </span>    <span class="p">)</span>
 <span class="gp">&gt;&gt;&gt; </span><span class="n">g</span><span class="o">.</span><span class="n">show</span><span class="p">(</span><span class="s1">&#39;view.html&#39;</span><span class="p">)</span>
 </pre></div>