Merge branch 'main' into hypothesis-strategies

TomNicholas · Nov 2, 2023 · 968ee72 · 968ee72
2 parents 7841dd5 + d933578
commit 968ee72
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diff --git a/.codecov.yml b/.codecov.yml
@@ -1,16 +1,38 @@
 codecov:
-  ci:
-    # by default, codecov doesn't recognize azure as a CI provider
-    - dev.azure.com
-  require_ci_to_pass: yes
+  require_ci_to_pass: true
 
 coverage:
   status:
     project:
       default:
         # Require 1% coverage, i.e., always succeed
-        target: 1
+        target: 1%
+        flags:
+          - unittests
+        paths:
+         - "!xarray/tests/"
+      unittests:
+        target: 90%
+        flags:
+          - unittests
+        paths:
+          - "!xarray/tests/"
+      mypy:
+        target: 20%
+        flags:
+          - mypy
     patch: false
     changes: false
 
-comment: off
+comment: false
+
+flags:
+  unittests:
+    paths:
+      - "xarray"
+      - "!xarray/tests"
+    carryforward: false
+  mypy:
+    paths:
+      - "xarray"
+    carryforward: false
diff --git a/.github/ISSUE_TEMPLATE/bugreport.yml b/.github/ISSUE_TEMPLATE/bugreport.yml
@@ -44,6 +44,7 @@ body:
         - label: Complete example — the example is self-contained, including all data and the text of any traceback.
         - label: Verifiable example — the example copy & pastes into an IPython prompt or [Binder notebook](https://mybinder.org/v2/gh/pydata/xarray/main?urlpath=lab/tree/doc/examples/blank_template.ipynb), returning the result.
         - label: New issue — a search of GitHub Issues suggests this is not a duplicate.
+        - label: Recent environment — the issue occurs with the latest version of xarray and its dependencies.
 
   - type: textarea
     id: log-output

diff --git a/.github/labeler.yml b/.github/labeler.yml
@@ -54,6 +54,9 @@ topic-indexing:
   - xarray/core/indexes.py
   - xarray/core/indexing.py
 
+topic-NamedArray:
+  - xarray/namedarray/*
+
 topic-performance:
   - asv_bench/benchmarks/*
   - asv_bench/benchmarks/**/*

diff --git a/.github/workflows/benchmarks-last-release.yml b/.github/workflows/benchmarks-last-release.yml
@@ -17,7 +17,7 @@ jobs:
     steps:
       # We need the full repo to avoid this issue
       # https://github.com/actions/checkout/issues/23
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

diff --git a/.github/workflows/benchmarks.yml b/.github/workflows/benchmarks.yml
@@ -17,7 +17,7 @@ jobs:
     steps:
       # We need the full repo to avoid this issue
       # https://github.com/actions/checkout/issues/23
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

diff --git a/.github/workflows/ci-additional.yaml b/.github/workflows/ci-additional.yaml
@@ -22,7 +22,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 2
       - uses: xarray-contrib/ci-trigger@v1
@@ -44,7 +44,7 @@ jobs:
       PYTHON_VERSION: "3.10"
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -82,8 +82,6 @@ jobs:
     name: Mypy
     runs-on: "ubuntu-latest"
     needs: detect-ci-trigger
-    # temporarily skipping due to https://github.com/pydata/xarray/issues/6551
-    if: needs.detect-ci-trigger.outputs.triggered == 'false'
     defaults:
       run:
         shell: bash -l {0}
@@ -92,7 +90,7 @@ jobs:
       PYTHON_VERSION: "3.10"
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -123,7 +121,7 @@ jobs:
 
       - name: Run mypy
         run: |
-          python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report
+          python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report xarray/
 
       - name: Upload mypy coverage to Codecov
         uses: codecov/[email protected]
@@ -146,7 +144,7 @@ jobs:
       PYTHON_VERSION: "3.9"
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -177,7 +175,7 @@ jobs:
 
       - name: Run mypy
         run: |
-          python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report
+          python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report xarray/
 
       - name: Upload mypy coverage to Codecov
         uses: codecov/[email protected]
@@ -190,6 +188,126 @@ jobs:
 
 
 
+  pyright:
+    name: Pyright
+    runs-on: "ubuntu-latest"
+    needs: detect-ci-trigger
+    if: |
+        always()
+        && (
+            contains( github.event.pull_request.labels.*.name, 'run-pyright')
+        )
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      CONDA_ENV_FILE: ci/requirements/environment.yml
+      PYTHON_VERSION: "3.10"
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0 # Fetch all history for all branches and tags.
+
+      - name: set environment variables
+        run: |
+          echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
+      - name: Setup micromamba
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-file: ${{env.CONDA_ENV_FILE}}
+          environment-name: xarray-tests
+          create-args: >-
+            python=${{env.PYTHON_VERSION}}
+            conda
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
+      - name: Install xarray
+        run: |
+          python -m pip install --no-deps -e .
+      - name: Version info
+        run: |
+          conda info -a
+          conda list
+          python xarray/util/print_versions.py
+      - name: Install pyright
+        run: |
+          python -m pip install pyright --force-reinstall
+
+      - name: Run pyright
+        run: |
+          python -m pyright xarray/
+
+      - name: Upload pyright coverage to Codecov
+        uses: codecov/[email protected]
+        with:
+          file: pyright_report/cobertura.xml
+          flags: pyright
+          env_vars: PYTHON_VERSION
+          name: codecov-umbrella
+          fail_ci_if_error: false
+
+  pyright39:
+    name: Pyright 3.9
+    runs-on: "ubuntu-latest"
+    needs: detect-ci-trigger
+    if: |
+        always()
+        && (
+            contains( github.event.pull_request.labels.*.name, 'run-pyright')
+        )
+    defaults:
+      run:
+        shell: bash -l {0}
+    env:
+      CONDA_ENV_FILE: ci/requirements/environment.yml
+      PYTHON_VERSION: "3.9"
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0 # Fetch all history for all branches and tags.
+
+      - name: set environment variables
+        run: |
+          echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
+      - name: Setup micromamba
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          environment-file: ${{env.CONDA_ENV_FILE}}
+          environment-name: xarray-tests
+          create-args: >-
+            python=${{env.PYTHON_VERSION}}
+            conda
+          cache-environment: true
+          cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
+      - name: Install xarray
+        run: |
+          python -m pip install --no-deps -e .
+      - name: Version info
+        run: |
+          conda info -a
+          conda list
+          python xarray/util/print_versions.py
+      - name: Install pyright
+        run: |
+          python -m pip install pyright --force-reinstall
+
+      - name: Run pyright
+        run: |
+          python -m pyright xarray/
+
+      - name: Upload pyright coverage to Codecov
+        uses: codecov/[email protected]
+        with:
+          file: pyright_report/cobertura.xml
+          flags: pyright39
+          env_vars: PYTHON_VERSION
+          name: codecov-umbrella
+          fail_ci_if_error: false
+
+
+
   min-version-policy:
     name: Minimum Version Policy
     runs-on: "ubuntu-latest"
@@ -205,7 +323,7 @@ jobs:
       fail-fast: false
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -22,7 +22,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 2
       - uses: xarray-contrib/ci-trigger@v1
@@ -42,7 +42,7 @@ jobs:
       matrix:
         os: ["ubuntu-latest", "macos-latest", "windows-latest"]
         # Bookend python versions
-        python-version: ["3.9", "3.10", "3.11"]
+        python-version: ["3.9", "3.11"]
         env: [""]
         include:
           # Minimum python version:
@@ -60,7 +60,7 @@ jobs:
             python-version: "3.10"
             os: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
       - name: Set environment variables

diff --git a/.github/workflows/nightly-wheels.yml b/.github/workflows/nightly-wheels.yml
@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
     if: github.repository == 'pydata/xarray'
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
       - uses: actions/setup-python@v4

diff --git a/.github/workflows/pypi-release.yaml b/.github/workflows/pypi-release.yaml
@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     if: github.repository == 'pydata/xarray'
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
       - uses: actions/setup-python@v4
@@ -88,7 +88,7 @@ jobs:
           path: dist
       - name: Publish package to TestPyPI
         if: github.event_name == 'push'
-        uses: pypa/[email protected].8
+        uses: pypa/[email protected].10
         with:
           repository_url: https://test.pypi.org/legacy/
           verbose: true
@@ -111,6 +111,6 @@ jobs:
           name: releases
           path: dist
       - name: Publish package to PyPI
-        uses: pypa/[email protected].8
+        uses: pypa/[email protected].10
         with:
           verbose: true
diff --git a/.github/workflows/upstream-dev-ci.yaml b/.github/workflows/upstream-dev-ci.yaml
@@ -25,7 +25,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 2
       - uses: xarray-contrib/ci-trigger@v1
@@ -52,7 +52,7 @@ jobs:
       matrix:
         python-version: ["3.10"]
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
       - name: Set up conda environment
@@ -112,7 +112,7 @@ jobs:
       matrix:
         python-version: ["3.10"]
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
       - name: Set up conda environment