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Added readme text to emphasise need to unzip base transcriptomes
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mstubb committed Oct 21, 2015
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Expand Up @@ -102,7 +102,7 @@ Type of sequence to be analysed. Since TraCeR currently only works with TCR sequ
[kallisto_options]
base_transcriptome = /path/to/kallisto/transcriptome

Location of the transcriptome fasta file to which the specific TCR sequences will be appended from each cell. Can be downloaded from http://bio.math.berkeley.edu/kallisto/transcriptomes/ and many other places.
Location of the transcriptome fasta file to which the specific TCR sequences will be appended from each cell. Can be downloaded from http://bio.math.berkeley.edu/kallisto/transcriptomes/ and many other places. This must be a plain-text fasta file so decompress it if necessary (files from the Kallisto link are gzipped).

##Using TraCeR##
Tracer has two modes *assemble* and *summarise*.
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