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README typo fix
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mstubb committed Mar 14, 2016
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Expand Up @@ -116,7 +116,7 @@ TraCeR comes with a small dataset in `test_data/` (containing only TCRA or TCRB

tracer test -p <ncores> -c <config_file>

This will peform the [`asssemble`](#assemble-tcr-reconstruction) step using the small test dataset. It will then perform [`summarise`](#summarise-summary-and-clonotype-networks) using the assemblies that are generated along with pre-calculated output for two other cells (in `test_data/results`).
This will peform the [`assemble`](#assemble-tcr-reconstruction) step using the small test dataset. It will then perform [`summarise`](#summarise-summary-and-clonotype-networks) using the assemblies that are generated along with pre-calculated output for two other cells (in `test_data/results`).

Compare the output in `test_data/results/filtered_TCR_summary` with the expected results in `test_data/expected_summary`. There should be three cells, each with one productive alpha, one productive beta, one non-productive alpha and one non-productive beta. Cells 1 and 2 should be in a clonotype.

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