Skip to content

Commit

Permalink
More filename fixes to commit
Browse files Browse the repository at this point in the history
  • Loading branch information
mstubb committed Jan 4, 2016
1 parent 82746b3 commit 19c8f33
Show file tree
Hide file tree
Showing 21 changed files with 2,577 additions and 0 deletions.
12 changes: 12 additions & 0 deletions resources/igblast_dbs/human/imgt_tcr_db_d.fa
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
>TRBD1*01
gggacagggggc
>TRBD2*01
gggactagcggggggg
>TRBD2*02
gggactagcgggaggg
>TRDD1*01
gaaatagt
>TRDD2*01
ccttcctac
>TRDD3*01
actgggggatacg
Binary file added resources/igblast_dbs/human/imgt_tcr_db_d.fa.nhr
Binary file not shown.
Binary file added resources/igblast_dbs/human/imgt_tcr_db_d.fa.nin
Binary file not shown.
Binary file added resources/igblast_dbs/human/imgt_tcr_db_d.fa.nog
Binary file not shown.
12 changes: 12 additions & 0 deletions resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsd
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
lcl|trbd1*010
lcl|trbd2*011
lcl|trbd2*022
lcl|trdd1*013
lcl|trdd2*014
lcl|trdd3*015
trbd1*010
trbd2*011
trbd2*022
trdd1*013
trdd2*014
trdd3*015
Binary file added resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsi
Binary file not shown.
Binary file added resources/igblast_dbs/human/imgt_tcr_db_d.fa.nsq
Binary file not shown.
224 changes: 224 additions & 0 deletions resources/igblast_dbs/human/imgt_tcr_db_j.fa
Original file line number Diff line number Diff line change
@@ -0,0 +1,224 @@
>TRAJ1*01
gtatgaaagtattacctcccagttgcaatttggcaaaggaaccagagtttccacttctcc
cc
>TRAJ10*01
atactcacgggaggaggaaacaaactcacctttgggacaggcactcagctaaaagtggaa
ctca
>TRAJ11*01
tgaattcaggatacagcaccctcacctttgggaaggggactatgcttctagtctctccag
>TRAJ12*01
ggatggatagcagctataaattgatcttcgggagtgggaccagactgctggtcaggcctg
>TRAJ13*01
tgaattctgggggttaccagaaagttacctttggaattggaacaaagctccaagtcatcc
caa
>TRAJ13*02
tgaattctgggggttaccagaaagttacctttggaactggaacaaagctccaagtcatcc
caa
>TRAJ14*01
atttatagcacattcatctttgggagtgggacaagattatcagtaaaacctg
>TRAJ15*01
ccaaccaggcaggaactgctctgatctttgggaagggaaccaccttatcagtgagttcca
>TRAJ15*02
ccaaccaggcaggaactgctctgatctttgggaagggaacccacctatcagtgagttcca
>TRAJ16*01
ggttttcagatggccagaagctgctctttgcaaggggaaccatgttaaaggtggatctta
>TRAJ17*01
tgatcaaagctgcaggcaacaagctaacttttggaggaggaaccagggtgctagttaaac
caa
>TRAJ18*01
ccgacagaggctcaaccctggggaggctatactttggaagaggaactcagttgactgtct
ggcctg
>TRAJ19*01
gctatcaaagattttacaatttcacctttggaaagggatccaaacataatgtcactccaa
>TRAJ2*01
tgaatactggaggaacaattgataaactcacatttgggaaagggacccatgtattcatta
tatctg
>TRAJ20*01
gttctaacgactacaagctcagctttggagccggaaccacagtaactgtaagagcaa
>TRAJ21*01
tacaacttcaacaaattttactttggatctgggaccaaactcaatgtaaaaccaa
>TRAJ22*01
tttcttctggttctgcaaggcaactgacctttggatctgggacacaattgactgttttac
ctg
>TRAJ23*01
tgatttataaccagggaggaaagcttatcttcggacagggaacggagttatctgtgaaac
cca
>TRAJ23*02
tgatttataaccagggaggaaagcttatcttcggacagggaacggagctatctgtgaaac
cca
>TRAJ24*01
tgacaactgacagctgggggaaattcgagtttggagcagggacccaggttgtggtcaccc
cag
>TRAJ24*02
tgacaactgacagctgggggaaattgcagtttggagcagggacccaggttgtggtcaccc
cag
>TRAJ25*01
cagaaggacaaggcttctcctttatctttgggaaggggacaaggctgcttgtcaagccaa
>TRAJ26*01
gggataactatggtcagaattttgtctttggtcccggaaccagattgtccgtgctgccct
>TRAJ27*01
taacaccaatgcaggcaaatcaacctttggggatgggactacgctcactgtgaagccaa
>TRAJ28*01
catactctggggctgggagttaccaactcactttcgggaaggggaccaaactctcggtca
taccaa
>TRAJ29*01
ggaattcaggaaacacacctcttgtctttggaaagggcacaagactttctgtgattgcaa
>TRAJ3*01
ggggtacagcagtgcttccaagataatctttggatcagggaccagactcagcatccggcc
aa
>TRAJ30*01
tgaacagagatgacaagatcatctttggaaaagggacacgacttcatattctcccca
>TRAJ31*01
gaataacaatgccagactcatgtttggagatggaactcagctggtggtgaagccca
>TRAJ32*01
tgaattatggcggtgctacaaacaagctcatctttggaactggcactctgcttgctgtcc
agccaa
>TRAJ32*02
atggtggtgctacaaacaagctcatctttggaactggcactctgcttgctgtccagccaa
>TRAJ33*01
tggatagcaactatcagttaatctggggcgctgggaccaagctaattataaagccag
>TRAJ34*01
tcttataacaccgacaagctcatctttgggactgggaccagattacaagtctttccaa
>TRAJ35*01
gataggctttgggaatgtgctgcattgcgggtccggcactcaagtgattgttttaccac
>TRAJ36*01
tcaaactggggcaaacaacctcttctttgggactggaacgagactcaccgttattccct
>TRAJ37*01
tggctctggcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc
ag
>TRAJ37*02
tggctctagcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc
ag
>TRAJ38*01
taatgctggcaacaaccgtaagctgatttggggattgggaacaagcctggcagtaaatcc
ga
>TRAJ39*01
tgaataataatgcaggcaacatgctcacctttggagggggaacaaggttaatggtcaaac
ccc
>TRAJ4*01
tgttttctggtggctacaataagctgatttttggagcagggaccaggctggctgtacacc
cat
>TRAJ40*01
actacctcaggaacctacaaatacatctttggaacaggcaccaggctgaaggttttagca
a
>TRAJ41*01
gaactcaaattccgggtatgcactcaacttcggcaaaggcacctcgctgttggtcacacc
cc
>TRAJ42*01
tgaattatggaggaagccaaggaaatctcatctttggaaaaggcactaaactctctgtta
aaccaa
>TRAJ43*01
acaataacaatgacatgcgctttggagcagggaccagactgacagtaaaaccaa
>TRAJ44*01
taaataccggcactgccagtaaactcacctttgggactggaacaagacttcaggtcacgc
tcg
>TRAJ45*01
tgtattcaggaggaggtgctgacggactcacctttggcaaagggactcatctaatcatcc
agccct
>TRAJ46*01
agaagaaaagcagcggagacaagctgacttttgggaccgggactcgtttagcagttaggc
cca
>TRAJ47*01
tggaatatggaaacaaactggtctttggcgcaggaaccattctgagagtcaagtcct
>TRAJ47*02
tggaatatggaaacaagctggtctttggcgcaggaaccattctgagagtcaagtcct
>TRAJ48*01
tatctaactttggaaatgagaaattaacctttgggactggaacaagactcaccatcatac
cca
>TRAJ49*01
gaacaccggtaaccagttctattttgggacagggacaagtttgacggtcattccaa
>TRAJ5*01
tggacacgggcaggagagcacttacttttgggagtggaacaagactccaagtgcaaccaa
>TRAJ50*01
tgaaaacctcctacgacaaggtgatatttgggccagggacaagcttatcagtcattccaa
>TRAJ51*01
agatgcgtgacagctatgagaagctgatatttggaaaggagacatgactaactgtgaagc
caa
>TRAJ52*01
ctaatgctggtggtactagctatggaaagctgacatttggacaagggaccatcttgactg
tccatccaa
>TRAJ53*01
agaatagtggaggtagcaactataaactgacatttggaaaaggaactctcttaaccgtga
atccaa
>TRAJ54*01
taattcagggagcccagaagctggtatttggccaaggaaccaggctgactatcaacccaa
>TRAJ55*01
acaagtgctggtaatgctcctgttggggaaaggggatgagtacaaaaataaatccaa
>TRAJ56*01
ttatactggagccaatagtaagctgacatttggaaaaggaataactctgagtgttagacc
ag
>TRAJ57*01
taactcagggcggatctgaaaagctggtctttggaaagggaacgaaactgacagtaaacc
cat
>TRAJ58*01
tttaagaaaccagtggctctaggttgacctttggggaaggaacacagctcacagtgaatc
ctg
>TRAJ59*01
ggaaggaaggaaacaggaaatttacatttggaatggggacgcaagtgagagtga
>TRAJ6*01
tgcatcaggaggaagctacatacctacatttggaagaggaaccagccttattgttcatcc
gt
>TRAJ60*01
tgaagatcacctagatgctcaactttgggaaggggactgagttaattgtgagcctgg
>TRAJ61*01
ggtaccgggttaataggaaactgacatttggagccaacactagaggaatcatgaaactca
>TRAJ7*01
tgactatgggaacaacagactcgcttttgggaaggggaaccaagtggtggtcataccaa
>TRAJ8*01
tgaacacaggctttcagaaacttgtatttggaactggcacccgacttctggtcagtccaa
>TRAJ9*01
ggaaatactggaggcttcaaaactatctttggagcaggaacaagactatttgttaaagca
a
>TRBJ1-1*01
tgaacactgaagctttctttggacaaggcaccagactcacagttgtag
>TRBJ1-2*01
ctaactatggctacaccttcggttcggggaccaggttaaccgttgtag
>TRBJ1-3*01
ctctggaaacaccatatattttggagagggaagttggctcactgttgtag
>TRBJ1-4*01
caactaatgaaaaactgttttttggcagtggaacccagctctctgtcttgg
>TRBJ1-5*01
tagcaatcagccccagcattttggtgatgggactcgactctccatcctag
>TRBJ1-6*01
ctcctataattcacccctccactttgggaatgggaccaggctcactgtgacag
>TRBJ1-6*02
ctcctataattcacccctccactttgggaacgggaccaggctcactgtgacag
>TRBJ2-1*01
ctcctacaatgagcagttcttcgggccagggacacggctcaccgtgctag
>TRBJ2-2*01
cgaacaccggggagctgttttttggagaaggctctaggctgaccgtactgg
>TRBJ2-2P*01
ctgagaggcgctgctgggcgtctgggcggaggactcctggttctgg
>TRBJ2-3*01
agcacagatacgcagtattttggcccaggcacccggctgacagtgctcg
>TRBJ2-4*01
agccaaaaacattcagtacttcggcgccgggacccggctctcagtgctgg
>TRBJ2-5*01
accaagagacccagtacttcgggccaggcacgcggctcctggtgctcg
>TRBJ2-6*01
ctctggggccaacgtcctgactttcggggccggcagcaggctgaccgtgctgg
>TRBJ2-7*01
ctcctacgagcagtacttcgggccgggcaccaggctcacggtcacag
>TRBJ2-7*02
ctcctacgagcagtacgtcgggccgggcaccaggctcacggtcacag
>TRDJ1*01
acaccgataaactcatctttggaaaaggaacccgtgtgactgtggaaccaa
>TRDJ2*01
ctttgacagcacaactcttctttggaaagggaacacaactcatcgtggaaccag
>TRDJ3*01
ctcctgggacacccgacagatgtttttcggaactggcatcaaactcttcgtggagcccc
>TRDJ4*01
ccagacccctgatctttggcaaaggaacctatctggaggtacaacaac
>TRGJ1*01
gaattattataagaaactctttggcagtggaacaacactggttgtcacag
>TRGJ1*02
ttattataagaaactctttggcagtggaacaacacttgttgtcacag
>TRGJ2*01
gaattattataagaaactctttggcagtggaacaacacttgttgtcacag
>TRGJP*01
tgggcaagagttgggcaaaaaaatcaaggtatttggtcccggaacaaagcttatcattac
ag
>TRGJP1*01
ataccactggttggttcaagatatttgctgaagggactaagctcatagtaacttcacctg
>TRGJP2*01
atagtagtgattggatcaagacgtttgcaaaagggactaggctcatagtaacttcgcctg
Binary file added resources/igblast_dbs/human/imgt_tcr_db_j.fa.nhr
Binary file not shown.
Binary file added resources/igblast_dbs/human/imgt_tcr_db_j.fa.nin
Binary file not shown.
Binary file added resources/igblast_dbs/human/imgt_tcr_db_j.fa.nog
Binary file not shown.
Loading

0 comments on commit 19c8f33

Please sign in to comment.