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dinithins authored Feb 8, 2024
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Expand Up @@ -38,6 +38,9 @@ The package will be made available on PyPi soon.
### Tutorial

Please refer to the notebook [`notebooks/Tutorial.ipynb`](https://github.com/Teichlab/Genes2Genes/blob/main/notebooks/Tutorial.ipynb) which gives an example analysis between a reference and query dataset from literature.
Note: The runtime of the algorithm depends on the number of cells in the reference and query datasets, the number of interpolation time points, and the number of genes to align.
Current version of G2G utilizes concurrency through Python multiprocessing to speed up the gene-level alignment process. It creates a number of processes equal to the number of cores in the system, and each process performs a single gene-level alignment at one time.


### Funding Acknowledgement
Marie Skłodowska-Curie grant agreement No: 101026506 (Marie Curie Individual Fellowship) under the European Union’s Horizon 2020 research and innovation programme; Wellcome Trust Ph.D. Fellowship for Clinicians; Wellcome Trust (WT206194); ERC Consolidator Grant (646794); Wellcome Sanger Institute’s Translation Committee Fund.

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