Worm 1.8.0

• Features:
  • update Human-GEM template to ver 1.18.0

Worm 1.7.0

• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.4.0 (commit 23a8bcd)
  • update Human-GEM template to ver 1.17.0

Worm 1.6.0

• Features:
  • update Human-GEM template to ver 1.16.0

Worm 1.5.0

• Fixes (commit 677c97e):
  • change IDs conflicting to recent changes made to Human-GEM
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.4.0 (commit 5e5c76f)
  • update Human-GEM template to ver 1.15.0
• Style (commit 14f5cdf):
  • add gene names to new field geneShortNames, as suggested in #24

Worm 1.4.0

• Fixes (PR 460):
  • fix: correct MAM03882 annotation, as reported in Mouse-GEM #21
• Fixes (PR 429):
  • feat: add Acod1(Irg1) gene and associated reaction, as discussed in Mouse-GEM #20
• Features:
  • update ortholog pairs from Alliance of Genomes to ver 5.3.0 (commit d622c03)
  • update Human-GEM template to ver 1.14.0
• Style (commit d622c03):
  • change human-rat ortholog file from json to tsv, as discussed in Mouse-GEM #15

Worm 1.3.1

• Remove additional annotation information from .mat and .yml model files (PR #7)
  • resolves SysBioChalmers/Mouse-GEM#16
• Sync model with latest version of Human-GEM (now v1.12.0)
  • done automatically by running masterScriptWormGEM script

Worm 1.3.0

• Fixes/Features (commit 7c92b73 , PR 382):
  • add annotation information to model with updated annotateGEM function, before exporting
  • change compartment abbreviation from p to x and s to e, to sync with changes made in Human-GEM PR 341
  • update ortholog pairs from Alliance of Genomes to ver 5.1.1
• Style (PR #5):
  • add .gitattributes to ensure consistent LF (\n) line endings
  • add citation
  • rename branches: master --> main, devel --> develop

Worm 1.2.0

• Features (commit 261f703):
  • update GEM generating script by using function updateAnimalGEM and providing annotation files in tsv format
• Style (commit 6cf9444):
  • apply MA format met/rxn identifiers in alignment with Human-GME v1.8
• Style (commit 6bb648b):
  • add metsNoComp column to wormSpecificMets.tsv

Worm 1.1.0

• Features (commit b015bda):
  • incorporate Ascaroside transport and biosynthesis pathway into Worm1 from iCEL1314
  • change species-specific mets/rnx identifiers to MA format

Worm 1.0.0

• Style (PR #1):
  • update README according to the spec defined in standard-GEM ver 0.5
• Style (commit 52bfe61):
  • update .standard-GEM.md checklist to align with standard-GEM template ver 0.5
• Features (commit 01e042a):
  • adjust species-specific rxns to meet verify model tasks
• Features (commit d516223):
  • add code masterScriptWormGEM for the GEM reconstruction
• Features (commit 3c834c1):
  • upload data files
    • add worm-specific pathways
    • ortholog pairs from Alliance of Genomes ver 3.1.1