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Merge pull request #255 from SynBioDex/develop
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Develop
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cjmyers committed Dec 3, 2015
2 parents b4a05db + 253af22 commit c4f53e4
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15 changes: 1 addition & 14 deletions docs/javadocs/allclasses-frame.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:12:49 MST 2015 -->
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
<title>All Classes</title>
<meta name="date" content="2015-12-03">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
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<li><a href="org/sbolstandard/core2/OrientationType.html" title="enum in org.sbolstandard.core2" target="classFrame">OrientationType</a></li>
<li><a href="org/sbolstandard/core2/Participation.html" title="class in org.sbolstandard.core2" target="classFrame">Participation</a></li>
<li><a href="org/sbolstandard/core2/Range.html" title="class in org.sbolstandard.core2" target="classFrame">Range</a></li>
<li><a href="org/sbolstandard/core2/readTester.html" title="class in org.sbolstandard.core2" target="classFrame">readTester</a></li>
<li><a href="org/sbolstandard/core2/RefinementType.html" title="enum in org.sbolstandard.core2" target="classFrame">RefinementType</a></li>
<li><a href="org/sbolstandard/core2/RestrictionType.html" title="enum in org.sbolstandard.core2" target="classFrame">RestrictionType</a></li>
<li><a href="org/sbolstandard/core2/SBOLAbstractTests.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLAbstractTests</a></li>
<li><a href="org/sbolstandard/core2/SBOLDocument.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLDocument</a></li>
<li><a href="org/sbolstandard/core2/SBOLDocumentTest.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLDocumentTest</a></li>
<li><a href="org/sbolstandard/core2/SBOLFactory.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLFactory</a></li>
<li><a href="org/sbolstandard/core2/SBOLGenerateFile.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLGenerateFile</a></li>
<li><a href="org/sbolstandard/core2/SBOLReader.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLReader</a></li>
<li><a href="org/sbolstandard/core2/SBOLReaderTest.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLReaderTest</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestSuite.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLTestSuite</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLTestUtils</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.Terms.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLTestUtils.Terms</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.Terms.moduleRoles.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLTestUtils.Terms.moduleRoles</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.Terms.sequenceTypes.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLTestUtils.Terms.sequenceTypes</a></li>
<li><a href="org/sbolstandard/core2/SBOLValidate.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLValidate</a></li>
<li><a href="org/sbolstandard/core2/SBOLValidationException.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLValidationException</a></li>
<li><a href="org/sbolstandard/core2/SBOLWriter.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLWriter</a></li>
<li><a href="org/sbolstandard/core2/SBOLWriterTest.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLWriterTest</a></li>
<li><a href="org/sbolstandard/core2/Sequence.html" title="class in org.sbolstandard.core2" target="classFrame">Sequence</a></li>
<li><a href="org/sbolstandard/core2/SequenceAnnotation.html" title="class in org.sbolstandard.core2" target="classFrame">SequenceAnnotation</a></li>
<li><a href="org/sbolstandard/core2/SequenceConstraint.html" title="class in org.sbolstandard.core2" target="classFrame">SequenceConstraint</a></li>
<li><a href="org/sbolstandard/core2/SequenceOntology.html" title="class in org.sbolstandard.core2" target="classFrame">SequenceOntology</a></li>
<li><a href="org/sbolstandard/core2/SystemsBiologyOntology.html" title="class in org.sbolstandard.core2" target="classFrame">SystemsBiologyOntology</a></li>
<li><a href="org/sbolstandard/core2/TopLevel.html" title="class in org.sbolstandard.core2" target="classFrame">TopLevel</a></li>
<li><a href="org/sbolstandard/core2/URIcomplianceTest.html" title="class in org.sbolstandard.core2" target="classFrame">URIcomplianceTest</a></li>
<li><a href="org/sbolstandard/core2/writeTester.html" title="class in org.sbolstandard.core2" target="classFrame">writeTester</a></li>
</ul>
</div>
</body>
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15 changes: 1 addition & 14 deletions docs/javadocs/allclasses-noframe.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:12:49 MST 2015 -->
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
<title>All Classes</title>
<meta name="date" content="2015-12-03">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
Expand Down Expand Up @@ -32,33 +32,20 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/sbolstandard/core2/OrientationType.html" title="enum in org.sbolstandard.core2">OrientationType</a></li>
<li><a href="org/sbolstandard/core2/Participation.html" title="class in org.sbolstandard.core2">Participation</a></li>
<li><a href="org/sbolstandard/core2/Range.html" title="class in org.sbolstandard.core2">Range</a></li>
<li><a href="org/sbolstandard/core2/readTester.html" title="class in org.sbolstandard.core2">readTester</a></li>
<li><a href="org/sbolstandard/core2/RefinementType.html" title="enum in org.sbolstandard.core2">RefinementType</a></li>
<li><a href="org/sbolstandard/core2/RestrictionType.html" title="enum in org.sbolstandard.core2">RestrictionType</a></li>
<li><a href="org/sbolstandard/core2/SBOLAbstractTests.html" title="class in org.sbolstandard.core2">SBOLAbstractTests</a></li>
<li><a href="org/sbolstandard/core2/SBOLDocument.html" title="class in org.sbolstandard.core2">SBOLDocument</a></li>
<li><a href="org/sbolstandard/core2/SBOLDocumentTest.html" title="class in org.sbolstandard.core2">SBOLDocumentTest</a></li>
<li><a href="org/sbolstandard/core2/SBOLFactory.html" title="class in org.sbolstandard.core2">SBOLFactory</a></li>
<li><a href="org/sbolstandard/core2/SBOLGenerateFile.html" title="class in org.sbolstandard.core2">SBOLGenerateFile</a></li>
<li><a href="org/sbolstandard/core2/SBOLReader.html" title="class in org.sbolstandard.core2">SBOLReader</a></li>
<li><a href="org/sbolstandard/core2/SBOLReaderTest.html" title="class in org.sbolstandard.core2">SBOLReaderTest</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestSuite.html" title="class in org.sbolstandard.core2">SBOLTestSuite</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.html" title="class in org.sbolstandard.core2">SBOLTestUtils</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.Terms.html" title="class in org.sbolstandard.core2">SBOLTestUtils.Terms</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.Terms.moduleRoles.html" title="class in org.sbolstandard.core2">SBOLTestUtils.Terms.moduleRoles</a></li>
<li><a href="org/sbolstandard/core2/SBOLTestUtils.Terms.sequenceTypes.html" title="class in org.sbolstandard.core2">SBOLTestUtils.Terms.sequenceTypes</a></li>
<li><a href="org/sbolstandard/core2/SBOLValidate.html" title="class in org.sbolstandard.core2">SBOLValidate</a></li>
<li><a href="org/sbolstandard/core2/SBOLValidationException.html" title="class in org.sbolstandard.core2">SBOLValidationException</a></li>
<li><a href="org/sbolstandard/core2/SBOLWriter.html" title="class in org.sbolstandard.core2">SBOLWriter</a></li>
<li><a href="org/sbolstandard/core2/SBOLWriterTest.html" title="class in org.sbolstandard.core2">SBOLWriterTest</a></li>
<li><a href="org/sbolstandard/core2/Sequence.html" title="class in org.sbolstandard.core2">Sequence</a></li>
<li><a href="org/sbolstandard/core2/SequenceAnnotation.html" title="class in org.sbolstandard.core2">SequenceAnnotation</a></li>
<li><a href="org/sbolstandard/core2/SequenceConstraint.html" title="class in org.sbolstandard.core2">SequenceConstraint</a></li>
<li><a href="org/sbolstandard/core2/SequenceOntology.html" title="class in org.sbolstandard.core2">SequenceOntology</a></li>
<li><a href="org/sbolstandard/core2/SystemsBiologyOntology.html" title="class in org.sbolstandard.core2">SystemsBiologyOntology</a></li>
<li><a href="org/sbolstandard/core2/TopLevel.html" title="class in org.sbolstandard.core2">TopLevel</a></li>
<li><a href="org/sbolstandard/core2/URIcomplianceTest.html" title="class in org.sbolstandard.core2">URIcomplianceTest</a></li>
<li><a href="org/sbolstandard/core2/writeTester.html" title="class in org.sbolstandard.core2">writeTester</a></li>
</ul>
</div>
</body>
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6 changes: 3 additions & 3 deletions docs/javadocs/constant-values.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:12:48 MST 2015 -->
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:46 MST 2015 -->
<title>Constant Field Values</title>
<meta name="date" content="2015-12-03">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
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<li><a href="org/sbolstandard/core2/package-summary.html">Package</a></li>
<li>Class</li>
<li>Use</li>
<li><a href="org/sbolstandard/core2/package-tree.html">Tree</a></li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
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<li><a href="org/sbolstandard/core2/package-summary.html">Package</a></li>
<li>Class</li>
<li>Use</li>
<li><a href="org/sbolstandard/core2/package-tree.html">Tree</a></li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
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6 changes: 3 additions & 3 deletions docs/javadocs/deprecated-list.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:12:49 MST 2015 -->
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
<title>Deprecated List</title>
<meta name="date" content="2015-12-03">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
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<li><a href="org/sbolstandard/core2/package-summary.html">Package</a></li>
<li>Class</li>
<li>Use</li>
<li><a href="org/sbolstandard/core2/package-tree.html">Tree</a></li>
<li><a href="overview-tree.html">Tree</a></li>
<li class="navBarCell1Rev">Deprecated</li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
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<li><a href="org/sbolstandard/core2/package-summary.html">Package</a></li>
<li>Class</li>
<li>Use</li>
<li><a href="org/sbolstandard/core2/package-tree.html">Tree</a></li>
<li><a href="overview-tree.html">Tree</a></li>
<li class="navBarCell1Rev">Deprecated</li>
<li><a href="index-files/index-1.html">Index</a></li>
<li><a href="help-doc.html">Help</a></li>
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6 changes: 3 additions & 3 deletions docs/javadocs/help-doc.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:12:49 MST 2015 -->
<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
<title>API Help</title>
<meta name="date" content="2015-12-03">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
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<li><a href="org/sbolstandard/core2/package-summary.html">Package</a></li>
<li>Class</li>
<li>Use</li>
<li><a href="org/sbolstandard/core2/package-tree.html">Tree</a></li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li class="navBarCell1Rev">Help</li>
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<li><a href="org/sbolstandard/core2/package-summary.html">Package</a></li>
<li>Class</li>
<li>Use</li>
<li><a href="org/sbolstandard/core2/package-tree.html">Tree</a></li>
<li><a href="overview-tree.html">Tree</a></li>
<li><a href="deprecated-list.html">Deprecated</a></li>
<li><a href="index-files/index-1.html">Index</a></li>
<li class="navBarCell1Rev">Help</li>
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