Merge pull request #260 from SynBioDex/master

v2.0 release again
SynBioDex · Dec 3, 2015 · c031f3d · c031f3d
2 parents fb45782 + 6905d87
commit c031f3d
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diff --git a/core2/src/main/java/org/sbolstandard/core2/SBOLFactory.java b/core2/src/main/java/org/sbolstandard/core2/SBOLFactory.java
diff --git a/docs/javadocs/allclasses-frame.html b/docs/javadocs/allclasses-frame.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>All Classes</title>
 <meta name="date" content="2015-12-03">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
@@ -35,7 +35,6 @@ <h1 class="bar">All Classes</h1>
 <li><a href="org/sbolstandard/core2/RefinementType.html" title="enum in org.sbolstandard.core2" target="classFrame">RefinementType</a></li>
 <li><a href="org/sbolstandard/core2/RestrictionType.html" title="enum in org.sbolstandard.core2" target="classFrame">RestrictionType</a></li>
 <li><a href="org/sbolstandard/core2/SBOLDocument.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLDocument</a></li>
-<li><a href="org/sbolstandard/core2/SBOLFactory.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLFactory</a></li>
 <li><a href="org/sbolstandard/core2/SBOLReader.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLReader</a></li>
 <li><a href="org/sbolstandard/core2/SBOLValidate.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLValidate</a></li>
 <li><a href="org/sbolstandard/core2/SBOLValidationException.html" title="class in org.sbolstandard.core2" target="classFrame">SBOLValidationException</a></li>

diff --git a/docs/javadocs/allclasses-noframe.html b/docs/javadocs/allclasses-noframe.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>All Classes</title>
 <meta name="date" content="2015-12-03">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
@@ -35,7 +35,6 @@ <h1 class="bar">All Classes</h1>
 <li><a href="org/sbolstandard/core2/RefinementType.html" title="enum in org.sbolstandard.core2">RefinementType</a></li>
 <li><a href="org/sbolstandard/core2/RestrictionType.html" title="enum in org.sbolstandard.core2">RestrictionType</a></li>
 <li><a href="org/sbolstandard/core2/SBOLDocument.html" title="class in org.sbolstandard.core2">SBOLDocument</a></li>
-<li><a href="org/sbolstandard/core2/SBOLFactory.html" title="class in org.sbolstandard.core2">SBOLFactory</a></li>
 <li><a href="org/sbolstandard/core2/SBOLReader.html" title="class in org.sbolstandard.core2">SBOLReader</a></li>
 <li><a href="org/sbolstandard/core2/SBOLValidate.html" title="class in org.sbolstandard.core2">SBOLValidate</a></li>
 <li><a href="org/sbolstandard/core2/SBOLValidationException.html" title="class in org.sbolstandard.core2">SBOLValidationException</a></li>

diff --git a/docs/javadocs/constant-values.html b/docs/javadocs/constant-values.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:46 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:22 MST 2015 -->
 <title>Constant Field Values</title>
 <meta name="date" content="2015-12-03">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">

diff --git a/docs/javadocs/deprecated-list.html b/docs/javadocs/deprecated-list.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>Deprecated List</title>
 <meta name="date" content="2015-12-03">
 <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">

diff --git a/docs/javadocs/help-doc.html b/docs/javadocs/help-doc.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>API Help</title>
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diff --git a/docs/javadocs/index-files/index-1.html b/docs/javadocs/index-files/index-1.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-10.html b/docs/javadocs/index-files/index-10.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-11.html b/docs/javadocs/index-files/index-11.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-12.html b/docs/javadocs/index-files/index-12.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-13.html b/docs/javadocs/index-files/index-13.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-14.html b/docs/javadocs/index-files/index-14.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
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 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-15.html b/docs/javadocs/index-files/index-15.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>P-Index</title>
 <meta name="date" content="2015-12-03">
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diff --git a/docs/javadocs/index-files/index-16.html b/docs/javadocs/index-files/index-16.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>R-Index</title>
 <meta name="date" content="2015-12-03">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
@@ -86,10 +86,6 @@ <h2 class="title">R</h2>
 <dd>
 <div class="block">Takes in a given RDF InputStream and add the data read to this SBOLDocument.</div>
 </dd>
-<dt><span class="strong"><a href="../org/sbolstandard/core2/SBOLFactory.html#read(java.io.InputStream)">read(InputStream)</a></span> - Static method in class org.sbolstandard.core2.<a href="../org/sbolstandard/core2/SBOLFactory.html" title="class in org.sbolstandard.core2">SBOLFactory</a></dt>
-<dd>
-<div class="block">Creates a fresh SBOL document instance and populates its contents from the given XML source.</div>
-</dd>
 <dt><span class="strong"><a href="../org/sbolstandard/core2/SBOLReader.html#read(java.lang.String)">read(String)</a></span> - Static method in class org.sbolstandard.core2.<a href="../org/sbolstandard/core2/SBOLReader.html" title="class in org.sbolstandard.core2">SBOLReader</a></dt>
 <dd>
 <div class="block">Takes in the given RDF filename and converts the file to an SBOLDocument.</div>

diff --git a/docs/javadocs/index-files/index-17.html b/docs/javadocs/index-files/index-17.html
@@ -2,7 +2,7 @@
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 <html lang="en">
 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>S-Index</title>
 <meta name="date" content="2015-12-03">
 <link rel="stylesheet" type="text/css" href="../stylesheet.css" title="Style">
@@ -80,8 +80,6 @@ <h2 class="title">S</h2>
  and then adds the following namespaces: <code>Sbol2Terms.sbol2</code>, <code>Sbol1Terms.rdf</code>, <code>Sbol2Terms.dc</code>,
  and <code>Sbol2Terms.prov</code>.</div>
 </dd>
-<dt><a href="../org/sbolstandard/core2/SBOLFactory.html" title="class in org.sbolstandard.core2"><span class="strong">SBOLFactory</span></a> - Class in <a href="../org/sbolstandard/core2/package-summary.html">org.sbolstandard.core2</a></dt>
-<dd>&nbsp;</dd>
 <dt><a href="../org/sbolstandard/core2/SBOLReader.html" title="class in org.sbolstandard.core2"><span class="strong">SBOLReader</span></a> - Class in <a href="../org/sbolstandard/core2/package-summary.html">org.sbolstandard.core2</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="strong"><a href="../org/sbolstandard/core2/SBOLReader.html#SBOLReader()">SBOLReader()</a></span> - Constructor for class org.sbolstandard.core2.<a href="../org/sbolstandard/core2/SBOLReader.html" title="class in org.sbolstandard.core2">SBOLReader</a></dt>

diff --git a/docs/javadocs/index-files/index-18.html b/docs/javadocs/index-files/index-18.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
 <title>T-Index</title>
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diff --git a/docs/javadocs/index-files/index-19.html b/docs/javadocs/index-files/index-19.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-2.html b/docs/javadocs/index-files/index-2.html
@@ -2,7 +2,7 @@
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 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-20.html b/docs/javadocs/index-files/index-20.html
@@ -2,7 +2,7 @@
 <!-- NewPage -->
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 <head>
-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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diff --git a/docs/javadocs/index-files/index-21.html b/docs/javadocs/index-files/index-21.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:47 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:23 MST 2015 -->
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@@ -81,10 +81,6 @@ <h2 class="title">W</h2>
 <div class="block">Serializes SBOLDocument and outputs the data from the serialization to the given output
  stream in RDF format</div>
 </dd>
-<dt><span class="strong"><a href="../org/sbolstandard/core2/SBOLFactory.html#write(org.sbolstandard.core2.SBOLDocument,%20java.io.OutputStream)">write(SBOLDocument, OutputStream)</a></span> - Static method in class org.sbolstandard.core2.<a href="../org/sbolstandard/core2/SBOLFactory.html" title="class in org.sbolstandard.core2">SBOLFactory</a></dt>
-<dd>
-<div class="block">Writes the contents of an SBOL document in XML format to the given output stream.</div>
-</dd>
 <dt><span class="strong"><a href="../org/sbolstandard/core2/SBOLWriter.html#write(org.sbolstandard.core2.SBOLDocument,%20java.io.File)">write(SBOLDocument, File)</a></span> - Static method in class org.sbolstandard.core2.<a href="../org/sbolstandard/core2/SBOLWriter.html" title="class in org.sbolstandard.core2">SBOLWriter</a></dt>
 <dd>
 <div class="block">Serializes a given SBOLDocument and outputs the data from the serialization to the given output file

diff --git a/docs/javadocs/index-files/index-3.html b/docs/javadocs/index-files/index-3.html
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diff --git a/docs/javadocs/index-files/index-4.html b/docs/javadocs/index-files/index-4.html
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diff --git a/docs/javadocs/index-files/index-5.html b/docs/javadocs/index-files/index-5.html
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diff --git a/docs/javadocs/index-files/index-6.html b/docs/javadocs/index-files/index-6.html
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diff --git a/docs/javadocs/index-files/index-7.html b/docs/javadocs/index-files/index-7.html
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diff --git a/docs/javadocs/index-files/index-8.html b/docs/javadocs/index-files/index-8.html
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diff --git a/docs/javadocs/index-files/index-9.html b/docs/javadocs/index-files/index-9.html
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diff --git a/docs/javadocs/index.html b/docs/javadocs/index.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc on Thu Dec 03 16:23:47 MST 2015 -->
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diff --git a/docs/javadocs/org/sbolstandard/core2/AccessType.html b/docs/javadocs/org/sbolstandard/core2/AccessType.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:44 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:20 MST 2015 -->
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diff --git a/docs/javadocs/org/sbolstandard/core2/Annotation.html b/docs/javadocs/org/sbolstandard/core2/Annotation.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:44 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:20 MST 2015 -->
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diff --git a/docs/javadocs/org/sbolstandard/core2/Collection.html b/docs/javadocs/org/sbolstandard/core2/Collection.html
@@ -2,7 +2,7 @@
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-<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:23:44 MST 2015 -->
+<!-- Generated by javadoc (version 1.7.0_60) on Thu Dec 03 16:29:21 MST 2015 -->
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