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Gonza10V wants to merge 54 commits intodevelopSynBioDex/SBOL-utilities:developfrom gonzalo-internship3SynBioDex/SBOL-utilities:gonzalo-internship3Copy head branch name to clipboard

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Commits on Jul 25, 2022

• adding digeastion

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• solving Dseqrecord import

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Commits on Jul 27, 2022

• updating sequence number cheking error message

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• Update digested_reactant logic

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Commits on Jul 28, 2022

• updated digestion

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• Merge pull request #163 from SynBioDex/develop

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Commits on Aug 1, 2022

• removing -1 from sequence computation on open backbone

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• Merge branch 'gonzalo-internship3' of github.com:SynBioDex/SBOL-utilities into gonzalo-internship3

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• updating testing with sequence computation

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Commits on Aug 26, 2022

• advances in ligation and is_circular helper function

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Commits on Aug 31, 2022

• advances on ligation process logic

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• advances on components creation

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Commits on Sep 1, 2022

• ligation prototype

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Commits on Sep 9, 2022

• assembly and part in backbone2

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Commits on Sep 28, 2022

• functional digestion

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Commits on Jan 17, 2023

• updated components and tests

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• Merge pull request #1 from Gonza10V/gonzalo-internship3

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Commits on Jan 18, 2023

• Merge branch 'SynBioDex:develop' into develop

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• Merge pull request #2 from Gonza10V/develop

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Commits on Mar 22, 2023

• updated version part_in_backbone_from_sbol

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• test in separated routines

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• provide a correct file direction for convert_from_genbank

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Commits on Mar 27, 2023

• using paterns in sbol-utilities for directories

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• add dir from codebase on test_part_in_backbone_from_sbol_bp011

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• adding objects to the document

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• Update sbol_utilities/component.py

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• Update sbol_utilities/component.py

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Commits on Mar 30, 2023

• update

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• Merge branch 'gonzalo-internship3' of github.com:Gonza10V/SBOL-utilities into gonzalo-internship3

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• changes in response to code review 27/03/23

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Commits on Apr 21, 2023

• if identity is not none overwrite the SBOL component

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Commits on Apr 26, 2023

• improved test_part_in_backbone_from_sbol_bp011

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• asserts with sets

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Commits on Apr 28, 2023

• Update sbol_utilities/component.py

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• adds TODOs

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Commits on May 2, 2023

• minor changes on comments

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Commits on May 19, 2023

• Merge pull request #192 from Gonza10V/gonzalo-internship3

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Commits on Oct 27, 2023

• combinatorial assembly and backbone from sbol

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• Merge branch 'SynBioDex:gonzalo-internship3' into gonzalo-internship3

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Commits on Oct 31, 2023

• adding notebook

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• Merge branch 'gonzalo-internship3' of github.com:Gonza10V/SBOL-utilities into gonzalo-internship3

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Commits on Dec 16, 2023

• update in engineered region

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• appending constraints to er

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• swapping er features order on constraints

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• now fixing order is optional on er

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• fixing order is optional and uses meets intead of preceeds

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Commits on Mar 26, 2024

• adding a new document to test linear backbone

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• replacing meets for precedes in engineered region

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Commits on Mar 27, 2024

• order is fixed by default un enr

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• testing now appending constraints

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• Merge pull request #3 from SynBioDex/gonzalo-internship3

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• Merge pull request #233 from Gonza10V/gonzalo-internship3

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Commits on Apr 7, 2024

• Merge branch 'develop' into gonzalo-internship3

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• Correct missing comma from conflict resolution in setup.py

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