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Gonza10V committed May 2, 2023
1 parent d33c3e5 commit 5d86cf5
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2 changes: 2 additions & 0 deletions test/test_component.py
Original file line number Diff line number Diff line change
Expand Up @@ -461,6 +461,7 @@ def test_assembly_plan_bp011(self):
podd_backbone, podd_backbone_seq = backbone('pOdd_bb', lvl1_pOdd_acceptor_seq, [1169,2259], 4, False, name='pOdd_bb')
doc.add([podd_backbone,podd_backbone_seq])
#parts in backbone
##get parts from genbank
j23100_b0034_dir = os.path.join(test_dir, 'test_files', 'j23100_b0034.gb')
sfgfp_dir = os.path.join(test_dir, 'test_files', 'sfgfp.gb')
b0015_dir = os.path.join(test_dir, 'test_files', 'b0015.gb')
Expand All @@ -473,6 +474,7 @@ def test_assembly_plan_bp011(self):
b0015_doc = convert_from_genbank(b0015_dir, 'https://github.com/Gonza10V')
b0015_ef = [top_level for top_level in b0015_doc if type(top_level)==sbol3.Component][0]
b0015_ef_seq_str = b0015_ef.sequences[0].lookup().elements
##SBOL parts in backbone
j23100_b0034_ac_in_bb, j23100_b0034_ac_in_bb_seq = part_in_backbone_from_sbol('j23100_b0034_ac_in_bb', j23100_b0034_ac, [476,545], [sbol3.SO_PROMOTER, sbol3.SO_RBS], 4, False, name='j23100_b0034_ac_in_bb')
doc.add([j23100_b0034_ac_in_bb, j23100_b0034_ac_in_bb_seq])
sfgfp_ce_in_bb, sfgfp_ce_in_bb_seq = part_in_backbone_from_sbol('sfgfp_ce_in_bb', sfgfp_ce, [130,854], [sbol3.SO_CDS], 4, False, name='sfgfp_ce_in_bb')
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