Set up visitor stubs for 3-to-2 conversion

SynBioDex · Oct 6, 2023 · 50467ef · 50467ef
1 parent f5877ae
commit 50467ef
Showing 1 changed file with 123 additions and 1 deletion.
diff --git a/sbol_utilities/sbol3_sbol2_conversion.py b/sbol_utilities/sbol3_sbol2_conversion.py
@@ -2,6 +2,128 @@
 import sbol2
 
 
+class SBOL3ConverterVisitor:
+
+    doc2: sbol2.Document
+
+    def __init__(self, doc2: sbol2.Document):
+        self.doc2 = doc2
+
+    def _convert_identified(self):
+        raise NotImplementedError('Conversion of identified objects from SBOL3 to SBOL2 not yet implemented')
+
+    def _convert_toplevel(self):
+        raise NotImplementedError('Conversion of toplevel objects from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_activity(self, a: sbol3.Activity):
+        raise NotImplementedError('Conversion of Activity from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_agent(self, a: sbol3.Agent):
+        raise NotImplementedError('Conversion of Agent from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_association(self, a: sbol3.Association):
+        raise NotImplementedError('Conversion of Association from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_attachment(self, a: sbol3.Attachment):
+        raise NotImplementedError('Conversion of Attachment from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_binary_prefix(self, a: sbol3.BinaryPrefix):
+        raise NotImplementedError('Conversion of BinaryPrefix from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_collection(self, a: sbol3.Collection):
+        raise NotImplementedError('Conversion of Collection from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_combinatorial_derivation(self, a: sbol3.CombinatorialDerivation):
+        raise NotImplementedError('Conversion of CombinatorialDerivation from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_component(self, a: sbol3.Component):
+        raise NotImplementedError('Conversion of Component from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_component_reference(self, a: sbol3.ComponentReference):
+        raise NotImplementedError('Conversion of ComponentReference from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_constraint(self, a: sbol3.Constraint):
+        raise NotImplementedError('Conversion of Constraint from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_cut(self, a: sbol3.Cut):
+        raise NotImplementedError('Conversion of Cut from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_document(self, a: sbol3.Document):
+        raise NotImplementedError('Conversion of Document from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_entire_sequence(self, a: sbol3.EntireSequence):
+        raise NotImplementedError('Conversion of EntireSequence from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_experiment(self, a: sbol3.Experiment):
+        raise NotImplementedError('Conversion of Experiment from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_experimental_data(self, a: sbol3.ExperimentalData):
+        raise NotImplementedError('Conversion of ExperimentalData from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_externally_defined(self, a: sbol3.ExternallyDefined):
+        raise NotImplementedError('Conversion of ExternallyDefined from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_implementation(self, a: sbol3.Implementation):
+        raise NotImplementedError('Conversion of Implementation from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_interaction(self, a: sbol3.Interaction):
+        raise NotImplementedError('Conversion of Interaction from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_interface(self, a: sbol3.Interface):
+        raise NotImplementedError('Conversion of Interface from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_local_sub_component(self, a: sbol3.LocalSubComponent):
+        raise NotImplementedError('Conversion of LocalSubComponent from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_measure(self, a: sbol3.Measure):
+        raise NotImplementedError('Conversion of Measure from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_model(self, a: sbol3.Model):
+        raise NotImplementedError('Conversion of Model from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_participation(self, a: sbol3.Participation):
+        raise NotImplementedError('Conversion of Participation from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_plan(self, a: sbol3.Plan):
+        raise NotImplementedError('Conversion of Plan from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_prefixed_unit(self, a: sbol3.PrefixedUnit):
+        raise NotImplementedError('Conversion of PrefixedUnit from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_range(self, a: sbol3.Range):
+        raise NotImplementedError('Conversion of Range from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_si_prefix(self, a: sbol3.SIPrefix):
+        raise NotImplementedError('Conversion of SIPrefix from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_sequence(self, a: sbol3.Sequence):
+        raise NotImplementedError('Conversion of Sequence from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_sequence_feature(self, a: sbol3.SequenceFeature):
+        raise NotImplementedError('Conversion of SequenceFeature from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_singular_unit(self, a: sbol3.SingularUnit):
+        raise NotImplementedError('Conversion of SingularUnit from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_sub_component(self, a: sbol3.SubComponent):
+        raise NotImplementedError('Conversion of SubComponent from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_unit_division(self, a: sbol3.UnitDivision):
+        raise NotImplementedError('Conversion of UnitDivision from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_unit_exponentiation(self, a: sbol3.UnitExponentiation):
+        raise NotImplementedError('Conversion of UnitExponentiation from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_unit_multiplication(self, a: sbol3.UnitMultiplication):
+        raise NotImplementedError('Conversion of UnitMultiplication from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_usage(self, a: sbol3.Usage):
+        raise NotImplementedError('Conversion of Usage from SBOL3 to SBOL2 not yet implemented')
+
+    def visit_variable_feature(self, a: sbol3.VariableFeature):
+        raise NotImplementedError('Conversion of VariableFeature from SBOL3 to SBOL2 not yet implemented')
+
+
 class SBOL2SBOL3Converter:
     @staticmethod
     def convert3to2(doc3: sbol3.Document) -> sbol2.Document:
@@ -11,7 +133,7 @@ def convert3to2(doc3: sbol3.Document) -> sbol2.Document:
         :returns: SBOL2 document
         """
         doc2 = sbol2.Document()
-        # TODO: build converter here
+        doc3.accept(SBOL3ConverterVisitor(doc2))
         return doc2
 
     @staticmethod