Skip to content
@Sydney-Informatics-Hub

Sydney Informatics Hub

The Sydney Informatics Hub is a Core Research Facility of the University of Sydney, providing training and expertise on research data, analysis and computing.

Sydney Informatics Hub

The Sydney Informatics Hub is a Core Research Facility of The University of Sydney. We work towards enabling excellence in data and compute intensive research. We are:

We provide support, training, and expertise in statistics, data science, artificial intelligence, bioinformatics, software engineering, simulation, visualisation, and research computing.

We've:

And that's just the tip of the iceberg. Find out more about the many ways we have enabled research and the exciting things we are working on at our website.

Check out our live demos on Huggingface.

Official Node of:

Australian Biocommons Australian Plant Phenomics Network Visitor Stats

Pinned Loading

  1. tidbits tidbits Public

    SIH's "tech tidbits" blog for sharing useful tools and tips

    HTML 1

  2. Bioinformatics Bioinformatics Public

    A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.

    15 1

  3. usydColours usydColours Public

    University of Sydney colour palettes for ggplot2

    R 9 2

  4. stats-resources stats-resources Public

    SIH Statistics resources

    HTML 7 3

  5. dataharvester dataharvester Public

    Preprocess, aggregate, visualise and download geospatial data from a range of Australian (and international) data sources

    R 12 3

  6. aigis aigis Public

    Tools for aerial and satellite imagery acquisition, processing, annotation, and analysis using artificial intelligence

    Python 7 1

Repositories

Showing 10 of 246 repositories
  • EDAinR Public
    Sydney-Informatics-Hub/EDAinR’s past year of commit activity
    0 0 3 0 Updated Feb 1, 2025
  • mercury Public

    Mercury concentration in fish with Prof. Elaine Baker and the Marine Studies Institute

    Sydney-Informatics-Hub/mercury’s past year of commit activity
    0 1 0 0 Updated Jan 31, 2025
  • ONT-bacpac-nf Public

    Bacterial profiling workflow for ONT data, written in Nextflow.

    Sydney-Informatics-Hub/ONT-bacpac-nf’s past year of commit activity
    Nextflow 1 GPL-3.0 0 11 0 Updated Jan 31, 2025
  • .github Public
    Sydney-Informatics-Hub/.github’s past year of commit activity
    0 0 0 1 Updated Jan 31, 2025
  • RNASeq-DE Public
    Sydney-Informatics-Hub/RNASeq-DE’s past year of commit activity
    Shell 1 GPL-3.0 2 10 0 Updated Jan 28, 2025
  • Sydney-Informatics-Hub/Somatic-ShortV’s past year of commit activity
    Shell 8 GPL-3.0 2 11 0 Updated Jan 28, 2025
  • Bootstrapping-for-BQSR Public

    Bootstrap a variant resource for non-model organisms that lack known variant databases. This is to enable GATK Base Quality Score Recalibration (BQSR) to be performed for improved variant calls.

    Sydney-Informatics-Hub/Bootstrapping-for-BQSR’s past year of commit activity
    Shell 3 1 9 0 Updated Jan 28, 2025
  • Sydney-Informatics-Hub/Germline-ShortV’s past year of commit activity
    Shell 2 GPL-3.0 3 4 1 Updated Jan 28, 2025
  • Fastq-to-BAM Public

    Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

    Sydney-Informatics-Hub/Fastq-to-BAM’s past year of commit activity
    Shell 20 GPL-3.0 7 7 0 Updated Jan 28, 2025
  • Fastq-to-VCF Public

    High throughput illumina mammalian whole genome sequence analysis and joint genotyping

    Sydney-Informatics-Hub/Fastq-to-VCF’s past year of commit activity
    Shell 0 0 1 0 Updated Jan 28, 2025