Snakemake workflow to process small RNA read libraries for Loxodes magnus; read
libraries and local file paths are listed in workflow/config.yaml
, these
should be updated if workflow is run elsewhere.
[To be updated]
Snakemake rules and config files are in the workflow/
subfolder.
To run on a local server, use ./run_snakemake.sh
script, and add rule names
and additional parameters, e.g. ./run_snakemake.sh --dryrun
.