fix: misc. hotfixes #276
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Integration-test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| paths: | |
| - "CodeListLibrary_project/**" | |
| pull_request: | |
| branches: | |
| - master | |
| - Development | |
| paths: | |
| - "CodeListLibrary_project/**" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.event_name == 'pull_request' }} | |
| jobs: | |
| pre-deploy-test: | |
| env: | |
| working-directory: ./concept-library | |
| runs-on: | |
| labels: [self-hosted, linux, x64] | |
| group: heavy | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.11] | |
| services: | |
| db: | |
| image: postgres | |
| env: | |
| POSTGRES_DB: concept_library | |
| POSTGRES_USER: clluser_test | |
| POSTGRES_PASSWORD: password | |
| ports: | |
| - 5432:5432 | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libgconf-2-4 libatk1.0-0 libatk-bridge2.0-0 libgdk-pixbuf2.0-0 libgtk-3-0 libgbm-dev libnss3-dev libxss-dev libasound2 | |
| wget -q -O - https://dl.google.com/linux/linux_signing_key.pub | sudo apt-key add - | |
| - uses: browser-actions/setup-chrome@v1 | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('docker/requirements/test.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install LDAP files | |
| run: | | |
| sudo apt-get install -y -q libsasl2-dev libldap2-dev libssl-dev libpq-dev | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --upgrade --upgrade-strategy eager --default-timeout 100 -r docker/requirements/test.txt | |
| - name: Prepare Selenium | |
| uses: nanasess/setup-chromedriver@v2 | |
| - name: Run Browser | |
| run: | | |
| chrome --version | |
| - name: Run chromedriver | |
| run: | | |
| export DISPLAY=:99 | |
| chromedriver --url-base=/wd/hub & | |
| sudo Xvfb -ac :99 -screen 0 1280x1024x24 > /dev/null 2>&1 & # optional | |
| - name: Run application | |
| run: | | |
| export $(grep -v '^#' docker/.env/remote.test.env | xargs) | |
| cd CodeListLibrary_project | |
| python manage.py runserver 0.0.0.0:8000 > /dev/null & | |
| - name: Run tests | |
| run: | | |
| export $(grep -v '^#' docker/.env/remote.test.env | xargs) | |
| cd CodeListLibrary_project | |
| pytest -vv -s --random-order --cov-report xml --cov . --html=report.html --self-contained-html --alluredir=./clinicalcode/tests/allure-results | |
| env: | |
| DISPLAY: ":99" | |
| - name: Coverage report | |
| if: always() | |
| uses: 5monkeys/cobertura-action@v13 | |
| with: | |
| path: CodeListLibrary_project/coverage.xml | |
| minimum_coverage: 25 | |
| - name: Upload Test Results | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-results | |
| path: CodeListLibrary_project/report.html | |
| retention-days: 5 | |
| - name: Get Allure history | |
| uses: actions/checkout@v3 | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| continue-on-error: true | |
| with: | |
| ref: testing-result-pages | |
| path: testing-result-pages | |
| - name: Allure report action # Step to generate Allure report | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| uses: simple-elf/[email protected] | |
| with: | |
| allure_results: CodeListLibrary_project/clinicalcode/tests/allure-results | |
| allure_report: CodeListLibrary_project/clinicalcode/tests/allure-report | |
| allure_history: allure-history | |
| gh_pages: testing-result-pages | |
| report_url: https://meek-florentine-a03d43.netlify.app | |
| keep_reports: 15 # Specify the number of previous reports to keep | |
| - name: Upload an artifact files for record | |
| uses: actions/upload-pages-artifact@v2 | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| with: | |
| name: allure-report | |
| path: CodeListLibrary_project/clinicalcode/tests/allure-report | |
| - name: Publish to Netlify | |
| uses: nwtgck/[email protected] | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| with: | |
| publish-dir: './allure-history' | |
| production-deploy: true | |
| deploy-message: 'Deployed to https://meek-florentine-a03d43.netlify.app' | |
| env: | |
| NETLIFY_SITE_ID: ${{secrets.NETLIFY_SITE_ID}} | |
| NETLIFY_AUTH_TOKEN: ${{secrets.NETLIFY_AUTH_TOKEN}} | |
| timeout-minutes: 1 | |
| - name: Deploy report to gh-pages branch | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| uses: peaceiris/actions-gh-pages@v2 | |
| env: | |
| PERSONAL_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| PUBLISH_BRANCH: testing-result-pages | |
| PUBLISH_DIR: allure-history | |
| with: | |
| keepFiles: true |