fix: misc. hotfixes #275
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| name: Integration-test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| paths: | |
| - "CodeListLibrary_project/**" | |
| pull_request: | |
| branches: | |
| - master | |
| - Development | |
| paths: | |
| - "CodeListLibrary_project/**" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.event_name == 'pull_request' }} | |
| jobs: | |
| pre-deploy-test: | |
| env: | |
| working-directory: ./concept-library | |
| runs-on: | |
| labels: [self-hosted, linux, x64] | |
| group: heavy | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.11] | |
| services: | |
| db: | |
| image: postgres | |
| env: | |
| POSTGRES_DB: concept_library | |
| POSTGRES_USER: clluser_test | |
| POSTGRES_PASSWORD: password | |
| ports: | |
| - 5432:5432 | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libgconf-2-4 libatk1.0-0 libatk-bridge2.0-0 libgdk-pixbuf2.0-0 libgtk-3-0 libgbm-dev libnss3-dev libxss-dev libasound2 | |
| wget -q -O - https://dl.google.com/linux/linux_signing_key.pub | sudo apt-key add - | |
| - uses: browser-actions/setup-chrome@v1 | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('docker/requirements/test.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install LDAP files | |
| run: | | |
| sudo apt-get install -y -q libsasl2-dev libldap2-dev libssl-dev libpq-dev | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install --upgrade --upgrade-strategy eager --default-timeout 100 -r docker/requirements/test.txt | |
| - name: Prepare Selenium | |
| uses: nanasess/setup-chromedriver@v2 | |
| - name: Run Browser | |
| run: | | |
| chrome --version | |
| - name: Run chromedriver | |
| run: | | |
| export DISPLAY=:99 | |
| chromedriver --url-base=/wd/hub & | |
| sudo Xvfb -ac :99 -screen 0 1280x1024x24 > /dev/null 2>&1 & # optional | |
| - name: Run application | |
| run: | | |
| export $(grep -v '^#' docker/.env/remote.test.env | xargs) | |
| cd CodeListLibrary_project | |
| python manage.py runserver 0.0.0.0:8000 > /dev/null & | |
| - name: Run tests | |
| run: | | |
| export $(grep -v '^#' docker/.env/remote.test.env | xargs) | |
| cd CodeListLibrary_project | |
| pytest -vv -s --random-order --cov-report xml --cov . --html=report.html --self-contained-html --alluredir=./clinicalcode/tests/allure-results | |
| env: | |
| DISPLAY: ":99" | |
| - name: Coverage report | |
| if: always() | |
| uses: 5monkeys/cobertura-action@v13 | |
| with: | |
| path: CodeListLibrary_project/coverage.xml | |
| minimum_coverage: 25 | |
| - name: Upload Test Results | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-results | |
| path: CodeListLibrary_project/report.html | |
| retention-days: 5 | |
| - name: Get Allure history | |
| uses: actions/checkout@v3 | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| continue-on-error: true | |
| with: | |
| ref: testing-result-pages | |
| path: testing-result-pages | |
| - name: Allure report action # Step to generate Allure report | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| uses: simple-elf/[email protected] | |
| with: | |
| allure_results: CodeListLibrary_project/clinicalcode/tests/allure-results | |
| allure_report: CodeListLibrary_project/clinicalcode/tests/allure-report | |
| allure_history: allure-history | |
| gh_pages: testing-result-pages | |
| report_url: https://meek-florentine-a03d43.netlify.app | |
| keep_reports: 15 # Specify the number of previous reports to keep | |
| - name: Upload an artifact files for record | |
| uses: actions/upload-pages-artifact@v2 | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| with: | |
| name: allure-report | |
| path: CodeListLibrary_project/clinicalcode/tests/allure-report | |
| - name: Publish to Netlify | |
| uses: nwtgck/[email protected] | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| with: | |
| publish-dir: './allure-history' | |
| production-deploy: true | |
| deploy-message: 'Deployed to https://meek-florentine-a03d43.netlify.app' | |
| env: | |
| NETLIFY_SITE_ID: ${{secrets.NETLIFY_SITE_ID}} | |
| NETLIFY_AUTH_TOKEN: ${{secrets.NETLIFY_AUTH_TOKEN}} | |
| timeout-minutes: 1 | |
| - name: Deploy report to gh-pages branch | |
| if: (success() || failure()) && github.event_name != 'pull_request' | |
| uses: peaceiris/actions-gh-pages@v2 | |
| env: | |
| PERSONAL_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| PUBLISH_BRANCH: testing-result-pages | |
| PUBLISH_DIR: allure-history | |
| with: | |
| keepFiles: true |