Merge pull request #353 from StochSS/develop

v1.2.2 Release
StochSS · Apr 27, 2023 · 88be1d7 · 88be1d7
2 parents 359bd15 + ff3d2c4
commit 88be1d7
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diff --git a/.github/workflows/run_system_tests.yaml b/.github/workflows/run_system_tests.yaml
@@ -0,0 +1,30 @@
+name: Run SpatialPy System Tests
+
+on:
+  push:
+    branches: [staging, develop]
+
+jobs:
+  run-tests:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ ubuntu-latest ]
+
+    steps:
+    - name: Initialize environment
+      uses: actions/checkout@v2
+
+    - name: Install Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.7'
+
+    - name: Install Python dependencies
+      run: | 
+        python3 -m pip install --upgrade pip
+        python3 -m pip install -r requirements.txt
+        python3 -m pip install coverage
+        
+    - name: Run tests
+      run: coverage run --source=spatialpy test/run_system_tests.py
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 594471ec9654e1c403c8655ed91ad300
+config: cda440a90b02806b8875d767ce4b3688
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/.doctrees/classes/spatialpy.core.doctree b/docs/build/html/.doctrees/classes/spatialpy.core.doctree
diff --git a/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree b/docs/build/html/.doctrees/classes/spatialpy.solvers.doctree
diff --git a/docs/build/html/.doctrees/environment.pickle b/docs/build/html/.doctrees/environment.pickle
diff --git a/docs/build/html/.doctrees/index.doctree b/docs/build/html/.doctrees/index.doctree
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Overview: module code &#8212; SpatialPy 1.2.1 documentation</title>
+    <title>Overview: module code &#8212; SpatialPy 1.2.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../_static/css/spatialpy_alabaster_customizations.css" />
@@ -127,7 +127,7 @@ <h1>All modules for which code is available</h1>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;Copyright (C) 2019-2022.
+      &copy;Copyright (C) 2019-2023.
 
       |
       Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>

diff --git a/docs/build/html/_modules/spatialpy/core/boundarycondition.html b/docs/build/html/_modules/spatialpy/core/boundarycondition.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spatialpy.core.boundarycondition &#8212; SpatialPy 1.2.1 documentation</title>
+    <title>spatialpy.core.boundarycondition &#8212; SpatialPy 1.2.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
@@ -95,7 +95,7 @@ <h3 id="searchlabel">Quick search</h3>
   <h1>Source code for spatialpy.core.boundarycondition</h1><div class="highlight"><pre>
 <span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
 <span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
-<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
+<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>
 
 <span class="c1"># This program is free software: you can redistribute it and/or modify</span>
 <span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
@@ -276,7 +276,7 @@ <h1>Source code for spatialpy.core.boundarycondition</h1><div class="highlight">
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;Copyright (C) 2019-2022.
+      &copy;Copyright (C) 2019-2023.
 
       |
       Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>

diff --git a/docs/build/html/_modules/spatialpy/core/cleanup.html b/docs/build/html/_modules/spatialpy/core/cleanup.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spatialpy.core.cleanup &#8212; SpatialPy 1.2.1 documentation</title>
+    <title>spatialpy.core.cleanup &#8212; SpatialPy 1.2.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
@@ -95,7 +95,7 @@ <h3 id="searchlabel">Quick search</h3>
   <h1>Source code for spatialpy.core.cleanup</h1><div class="highlight"><pre>
 <span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
 <span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
-<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
+<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>
 
 <span class="c1"># This program is free software: you can redistribute it and/or modify</span>
 <span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
@@ -196,7 +196,7 @@ <h1>Source code for spatialpy.core.cleanup</h1><div class="highlight"><pre>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;Copyright (C) 2019-2022.
+      &copy;Copyright (C) 2019-2023.
 
       |
       Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>

diff --git a/docs/build/html/_modules/spatialpy/core/datafunction.html b/docs/build/html/_modules/spatialpy/core/datafunction.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spatialpy.core.datafunction &#8212; SpatialPy 1.2.1 documentation</title>
+    <title>spatialpy.core.datafunction &#8212; SpatialPy 1.2.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
@@ -95,7 +95,7 @@ <h3 id="searchlabel">Quick search</h3>
   <h1>Source code for spatialpy.core.datafunction</h1><div class="highlight"><pre>
 <span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
 <span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
-<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
+<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>
 
 <span class="c1"># This program is free software: you can redistribute it and/or modify</span>
 <span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
@@ -156,7 +156,7 @@ <h1>Source code for spatialpy.core.datafunction</h1><div class="highlight"><pre>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;Copyright (C) 2019-2022.
+      &copy;Copyright (C) 2019-2023.
 
       |
       Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>

diff --git a/docs/build/html/_modules/spatialpy/core/domain.html b/docs/build/html/_modules/spatialpy/core/domain.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spatialpy.core.domain &#8212; SpatialPy 1.2.1 documentation</title>
+    <title>spatialpy.core.domain &#8212; SpatialPy 1.2.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
@@ -95,7 +95,7 @@ <h3 id="searchlabel">Quick search</h3>
   <h1>Source code for spatialpy.core.domain</h1><div class="highlight"><pre>
 <span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
 <span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
-<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
+<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>
 
 <span class="c1"># This program is free software: you can redistribute it and/or modify</span>
 <span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
@@ -1384,7 +1384,7 @@ <h1>Source code for spatialpy.core.domain</h1><div class="highlight"><pre>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;Copyright (C) 2019-2022.
+      &copy;Copyright (C) 2019-2023.
 
       |
       Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>

diff --git a/docs/build/html/_modules/spatialpy/core/geometry.html b/docs/build/html/_modules/spatialpy/core/geometry.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spatialpy.core.geometry &#8212; SpatialPy 1.2.1 documentation</title>
+    <title>spatialpy.core.geometry &#8212; SpatialPy 1.2.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
@@ -95,7 +95,7 @@ <h3 id="searchlabel">Quick search</h3>
   <h1>Source code for spatialpy.core.geometry</h1><div class="highlight"><pre>
 <span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
 <span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
-<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
+<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>
 
 <span class="c1"># This program is free software: you can redistribute it and/or modify</span>
 <span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
@@ -257,7 +257,7 @@ <h1>Source code for spatialpy.core.geometry</h1><div class="highlight"><pre>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;Copyright (C) 2019-2022.
+      &copy;Copyright (C) 2019-2023.
 
       |
       Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>

diff --git a/docs/build/html/_modules/spatialpy/core/initialcondition.html b/docs/build/html/_modules/spatialpy/core/initialcondition.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spatialpy.core.initialcondition &#8212; SpatialPy 1.2.1 documentation</title>
+    <title>spatialpy.core.initialcondition &#8212; SpatialPy 1.2.2 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../../_static/css/spatialpy_alabaster_customizations.css" />
@@ -95,7 +95,7 @@ <h3 id="searchlabel">Quick search</h3>
   <h1>Source code for spatialpy.core.initialcondition</h1><div class="highlight"><pre>
 <span></span><span class="c1"># SpatialPy is a Python 3 package for simulation of</span>
 <span class="c1"># spatial deterministic/stochastic reaction-diffusion-advection problems</span>
-<span class="c1"># Copyright (C) 2019 - 2022 SpatialPy developers.</span>
+<span class="c1"># Copyright (C) 2019 - 2023 SpatialPy developers.</span>
 
 <span class="c1"># This program is free software: you can redistribute it and/or modify</span>
 <span class="c1"># it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 as</span>
@@ -306,7 +306,7 @@ <h1>Source code for spatialpy.core.initialcondition</h1><div class="highlight"><
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;Copyright (C) 2019-2022.
+      &copy;Copyright (C) 2019-2023.
 
       |
       Powered by <a href="http://sphinx-doc.org/">Sphinx 5.3.0</a>