Sparse waveforms were not handled

SpikeInterface · Oct 5, 2023 · fdebd12 · fdebd12
1 parent 6951e85
commit fdebd12
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/src/spikeinterface/sorters/internal/spyking_circus2.py b/src/spikeinterface/sorters/internal/spyking_circus2.py
@@ -99,10 +99,10 @@ def _run_from_folder(cls, sorter_output_folder, params, verbose):
         ## We launch a clustering (using hdbscan) relying on positions and features extracted on
         ## the fly from the snippets
         clustering_params = params["clustering"].copy()
-        clustering_params["waveforms_kwargs"] = params["waveforms"]
+        clustering_params["waveforms"] = params["waveforms"].copy()
 
         for k in ["ms_before", "ms_after"]:
-            clustering_params["waveforms_kwargs"][k] = params["general"][k]
+            clustering_params["waveforms"][k] = params["general"][k]
 
         clustering_params.update(dict(shared_memory=params["shared_memory"]))
         clustering_params["job_kwargs"] = job_kwargs

diff --git a/src/spikeinterface/sortingcomponents/clustering/random_projections.py b/src/spikeinterface/sortingcomponents/clustering/random_projections.py
@@ -199,9 +199,8 @@ def sigmoid(x, L, x0, k, b):
             recording,
             sorting,
             waveform_folder,
-            ms_before=params["ms_before"],
-            ms_after=params["ms_after"],
             **params["job_kwargs"],
+            **params['waveforms'],
             return_scaled=False,
             mode=mode,
         )