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Original file line number | Diff line number | Diff line change |
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@@ -10,8 +10,10 @@ on: | |
- main | ||
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||
jobs: | ||
fetch-versions: | ||
versions: | ||
runs-on: ubuntu-latest | ||
outputs: | ||
matrix: ${{ steps.set-matrix.outputs.matrix }} | ||
steps: | ||
- name: Checkout repository | ||
uses: actions/checkout@v2 | ||
|
@@ -28,64 +30,35 @@ jobs: | |
- name: Fetch package versions from PyPI | ||
run: | | ||
python .github/scripts/check_kilosort4_releases.py | ||
echo $(pwd) | ||
pwd | ||
ls .github/scripts | ||
echo ${{ github.workspace }} | ||
shell: bash | ||
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||
- name: Upload versions file | ||
uses: actions/upload-artifact@v2 | ||
with: | ||
name: versions | ||
path: ${{ github.workspace }}/.github/scripts/kilosort4-latest-version.json | ||
configure: | ||
needs: fetch-versions | ||
runs-on: ubuntu-latest | ||
outputs: | ||
matrix: ${{ steps.set-matrix.outputs.matrix }} | ||
steps: | ||
- name: Checkout to repository | ||
uses: actions/checkout@v2 | ||
|
||
- name: Download versions file | ||
uses: actions/download-artifact@v2 | ||
with: | ||
name: versions # Name of the artifact to download | ||
path: ${{ github.workspace }} # Directory to download the artifact to | ||
|
||
- name: Set matrix data | ||
id: set-matrix | ||
run: | | ||
pwd | ||
ls .github/scripts | ||
ls | ||
ls ${{ github.workspace }} | ||
echo "matrix=$(jq -c . < kilosort4-latest-version.json)" >> $GITHUB_OUTPUT | ||
echo "matrix=$(jq -c . < .github/scripts/kilosort4-latest-version.json)" >> $GITHUB_OUTPUT | ||
test: | ||
needs: configure | ||
needs: versions | ||
name: ${{ matrix.ks_version }} | ||
runs-on: ${{ matrix.os }} | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
python-version: ["3.12"] # TODO: "3.9", # Lower and higher versions we support | ||
os: [ubuntu-latest] # TODO: macos-13, windows-latest, | ||
ks_version: ${{ fromJson(needs.configure.outputs.matrix) }} # TODO: add / build from pypi based on Christians PR | ||
os: [ubuntu-latest] | ||
ks_version: ${{ fromJson(needs.versions.outputs.matrix) }} | ||
steps: | ||
- uses: actions/checkout@v4 | ||
- uses: actions/checkout@v2 | ||
|
||
- name: Setup Python ${{ matrix.python-version }} | ||
uses: actions/setup-python@v5 | ||
with: | ||
python-version: ${{ matrix.python-version }} | ||
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||
- name: Install packages | ||
# TODO: maybe dont need full? | ||
run: | | ||
pip install -e .[test] | ||
# git config --global user.email "[email protected]" | ||
# git config --global user.name "CI Almighty" | ||
# pip install tabulate | ||
shell: bash | ||
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- name: Install Kilosort | ||
|
@@ -94,13 +67,6 @@ jobs: | |
shell: bash | ||
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- name: Run new kilosort4 tests | ||
# run: chmod +x .github/test_kilosort4.sh | ||
# TODO: figure out the paths to be able to run this by calling the file directly | ||
run: | | ||
pytest -k test_kilosort4_new --durations=0 | ||
shell: bash | ||
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# TODO: pip install -e .[full,dev] is failing # | ||
#The conflict is caused by: | ||
# spikeinterface[docs] 0.101.0rc0 depends on datalad==0.16.2; extra == "docs" | ||
# spikeinterface[test] 0.101.0rc0 depends on datalad>=1.0.2; extra == "test" |