prepare release 0.100.5

doc/releases/0.100.5.rst

@@ -0,0 +1,12 @@
+.. _release0.100.5:
+
+SpikeInterface 0.100.5 release notes
+------------------------------------
+
+6th April 2024
+
+Minor release with bug fixes
+
+* Open Ephys: Use discovered recording ids to load sync timestamps (#2655)
+* Fix channel gains in NwbRecordingExtractor with backend (#2661)
+* Fix depth location in spikes on traces map (#2676)

doc/whatisnew.rst

@@ -8,6 +8,7 @@ Release notes
 .. toctree::
   :maxdepth: 1
 
+  releases/0.100.5.rst
   releases/0.100.4.rst
   releases/0.100.3.rst
   releases/0.100.2.rst
@@ -38,6 +39,11 @@ Release notes
   releases/0.9.1.rst
 
 
+Version 0.100.5
+===============
+
+* Minor release with bug fixes
+
 Version 0.100.4
 ===============
 

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "spikeinterface"
-version = "0.100.4"
+version = "0.100.5"
 authors = [
   { name="Alessio Buccino", email="[email protected]" },
   { name="Samuel Garcia", email="[email protected]" },
@@ -59,7 +59,7 @@ changelog = "https://spikeinterface.readthedocs.io/en/latest/whatisnew.html"
 
 extractors = [
     "MEArec>=1.8",
-    "pynwb>=2.3.0",
+    "pynwb>=2.6.0",
     "hdmf-zarr>=0.5.0",
     "pyedflib>=0.1.30",
     "sonpy;python_version<'3.10'",
@@ -80,7 +80,7 @@ streaming_extractors = [
     "fsspec",
     "aiohttp",
     "requests",
-    "pynwb>=2.3.0",
+    "pynwb>=2.6.0",
     "hdmf-zarr>=0.5.0",
     "remfile",
     "s3fs"

src/spikeinterface/extractors/nwbextractors.py

@@ -842,7 +842,8 @@ def _fetch_main_properties_backend(self):
         data_attributes = self.electrical_series["data"].attrs
         electrical_series_conversion = data_attributes["conversion"]
         gains = electrical_series_conversion * 1e6
-        if "channel_conversion" in data_attributes:
+        channel_conversion = self.electrical_series.get("channel_conversion", None)
+        if channel_conversion:
             gains *= self.electrical_series["channel_conversion"][:]
 
         # Channel offsets

src/spikeinterface/widgets/spikes_on_traces.py

@@ -183,8 +183,7 @@ def plot_matplotlib(self, data_plot, **backend_kwargs):
                 spike_times_to_plot = sorting.get_unit_spike_train(
                     unit, segment_index=segment_index, return_times=True
                 )[spike_start:spike_end]
-                unit_y_loc = min_y + max_y - dp.unit_locations[unit][1]
-                # markers = np.ones_like(spike_frames_to_plot) * (min_y + max_y - dp.unit_locations[unit][1])
+                unit_y_loc = dp.unit_locations[unit][1]
                 width = 2 * 1e-3
                 ellipse_kwargs = dict(width=width, height=10, fc="none", ec=dp.unit_colors[unit], lw=2)
                 patches = [Ellipse((s, unit_y_loc), **ellipse_kwargs) for s in spike_times_to_plot]