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projects/support_for_sinaps_probes_and_data_formats/README.md
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# Project title: support for SiNAPS probes and data formats | ||
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### Key Investigators | ||
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* Nina Kudryashova | ||
* Matteo Vincenzi | ||
* Viviane (is she staying for the hackathon?) | ||
* Alessio ? | ||
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## Project Description | ||
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Add support for SiNAPS probes (via probeinterface), data formats (partially done with *.bin and *.h5 extractors for SiNAPS). | ||
Potentially: check drift and drift correction for these probes. | ||
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### Background | ||
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SiNAPS probes are high-channel count, active electrodes, similar to other silicon active probes available and popular today (E.g., NeuroPixels)[^1]. They are currently not supported by Spikeinterface, but we started developing data extractors for the probe. | ||
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### Objectives | ||
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- [ ] Add support for SiNAPS data formats | ||
- [ ] Add support for SiNAPS research probes | ||
- [ ] Add tools for addressing SiNAPS-specific issues (e.g. amplification artefacts) | ||
- [ ] Bad channel detection | ||
- [ ] Drift correction | ||
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### Approach and Plan | ||
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- [ ] Test the extractors | ||
- [ ] Test probeinterface probes and add to spikeinterface | ||
- [ ] Discuss SiNAPS-specific amplification artefacts and approaches to masking them out for SI | ||
- [ ] Analyse drift and drift correction on these large probes? | ||
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## References | ||
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[^1]: https://plexon.com/products/sinaps/ | ||
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projects/support_for_sinaps_probes_and_data_formats/src/README.md
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