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Fixes import issues for testcase #28

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@GeorgWa GeorgWa commented Oct 28, 2024

The current DO-MS release failes to run with the testcase here:
https://do-ms.slavovlab.net/docs/getting-started-preprocessing

This PR solves the issue around the testcase and restores functionality.
Please check the change from report.parquet to report.tsv by default. Maybe you can implement a n automatic switch here or a note in the documentation.

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