Skip to content

Release v1.2.2
Compare
Choose a tag to compare
@ShixiangWang ShixiangWang released this 27 Jan 15:16
· 234 commits to master since this release
v1.2.2
74ce715

BUG REPORTS

  • Fixed bug in silhouette calculation in bp_extract_signatures() (#332).
    PAY ATTENTION: this may affect results.
  • Fixed bug using custom signature name in show_sig_profile_loop().

ENHANCEMENTS

  • Update SigProfilerExtractor to v1.1.0 (not tested).
  • Subset signatures to plot is available by sig_names option.
  • sigminer is available in bioconda channel: https://anaconda.org/bioconda/r-sigminer/
  • Updated ms strategy in sig_auto_extract() by assigning each signature to its
    best matched reference signatures.
  • Added get_shannon_diversity_index() to get diversity index for signatures (#333).
  • Added new method "S" (from Steele et al. 2019) for tallying copy number data (#329).
  • Included new (RS) reference signatures (related to #331).
  • Updated the internal code for getting relative activity in get_sig_exposure().

NEW FUNCTIONS

  • bp_get_clustered_sigs() to get clustered mean signatures.

DEPRECATED

Assets 2
Loading