Merge pull request #41 from ysimillides/master

mshr dependency removed

src/FEniCS.jl

@@ -36,4 +36,10 @@ include("jmesh.jl") #this file contains the mesh functions
 include("jfem.jl") #this file contains the fem functions
 include("jmisc.jl") #this file contains various miscallaneous functions to assist with solving etc
 include("jsolve.jl") #this file contains the solver functions/routines
+try 
+  pyimport("mshr")
+  include("fmshr.jl")
+catch ee 
+ print("mshr has not been included")
+end 
 end #module

src/fmshr.jl

@@ -0,0 +1,21 @@
+@pyimport mshr
+@fenicsclass Geometry
+
+#functions necessary for creating meshes from geometrical objects.
+#2D objects below
+Circle(centre,radius) = Geometry(mshr.Circle(centre,radius))
+Rectangle(corner1,corner2)=Geometry(mshr.Rectangle(corner1,corner2))
+Ellipse(centre,horizontal_semi_axis,vertical_semi_axis,fragments)=Geometry(mshr.Ellipse(centre,horizontal_semi_axis,vertical_semi_axis,fragments))
+
+#3d objects below
+Box(corner1,corner2) = Geometry(mshr.Box(corner1,corner2))
+Cone(top,bottom,bottom_radius,slices::Int)=Geometry(mshr.Cone(top,bottom,bottom_radius,slices))
+Sphere(centre,radius) = Geometry(mshr.Sphere(centre,radius))
+
+generate_mesh(geom_object::Geometry,size::Int)=Mesh(mshr.generate_mesh(geom_object.pyobject,size))
+
++(geom_object1::Geometry, geom_object2::Geometry) = Geometry(geom_object1.pyobject[:__add__](geom_object2.pyobject))
+-(geom_object1::Geometry, geom_object2::Geometry) = Geometry(geom_object1.pyobject[:__sub__](geom_object2.pyobject))
+*(geom_object1::Geometry, geom_object2::Geometry) = Geometry(geom_object1.pyobject[:__mul__](geom_object2.pyobject))
+
+export Circle,Rectangle,Ellipse,Box,Cone,Sphere,generate_mesh

src/jfem.jl

@@ -107,7 +107,7 @@ please refer to http://matplotlib.org/api/pyplot_api.html
 not all kwargs have been imported. Should you require any that are not imported
 open as issue, and I will attempt to add them.
 """
-Plot(in_plot::Union{Mesh,FunctionSpace,Function,Geometry};alpha=1,animated=false,antialiased=true,color="grey"
+Plot(in_plot::Union{Mesh,FunctionSpace,Function};alpha=1,animated=false,antialiased=true,color="grey"
 ,dash_capstyle="butt",dash_joinstyle="miter",dashes="",drawstyle="default",fillstyle="full",label="s",linestyle="solid",linewidth=1
 ,marker="",markeredgecolor="grey",markeredgewidth="",markerfacecolor="grey"
 ,markerfacecoloralt="grey",markersize=1,markevery="none",visible=true,title="") =fenics.common[:plotting][:plot](in_plot.pyobject,

src/jmesh.jl

@@ -2,8 +2,6 @@
 #These are the commands to define the Mesh class in Julia.
 #Tests for these can be found in the test_create.jl and test_pycreate.jl
 
-#necessary imports for some specific mesh operations.
-@pyimport mshr
 
 @fenicsclass Mesh  #https://fenicsproject.org/olddocs/dolfin/1.5.0/python/programmers-reference/cpp/mesh/Mesh.html
 #are converted automatically by PyCall
@@ -78,33 +76,9 @@ BoxMesh(p0, p1, nx::Int, ny::Int, nz::Int)= Mesh(fenics.BoxMesh(p0,p1,nx,ny,nz))
 
 RectangleMesh(p0,p1,nx::Int,ny::Int,diagdir::Union{String,Symbol}="right") = Mesh(fenics.RectangleMesh(p0,p1,nx,ny))
 
-
-
-
 export UnitTriangleMesh, UnitTetrahedronMesh, UnitSquareMesh, UnitQuadMesh,
 UnitIntervalMesh, UnitCubeMesh, BoxMesh, RectangleMesh, Mesh
 
-@fenicsclass Geometry
-
-#functions necessary for creating meshes from geometrical objects.
-#2D objects below
-Circle(centre,radius) = Geometry(mshr.Circle(centre,radius))
-Rectangle(corner1,corner2)=Geometry(mshr.Rectangle(corner1,corner2))
-Ellipse(centre,horizontal_semi_axis,vertical_semi_axis,fragments)=Geometry(mshr.Ellipse(centre,horizontal_semi_axis,vertical_semi_axis,fragments))
-
-#3d objects below
-Box(corner1,corner2) = Geometry(mshr.Box(corner1,corner2))
-Cone(top,bottom,bottom_radius,slices::Int)=Geometry(mshr.Cone(top,bottom,bottom_radius,slices))
-Sphere(centre,radius) = Geometry(mshr.Sphere(centre,radius))
-
-generate_mesh(geom_object::Geometry,size::Int)=Mesh(mshr.generate_mesh(geom_object.pyobject,size))
-
-+(geom_object1::Geometry, geom_object2::Geometry) = Geometry(geom_object1.pyobject[:__add__](geom_object2.pyobject))
--(geom_object1::Geometry, geom_object2::Geometry) = Geometry(geom_object1.pyobject[:__sub__](geom_object2.pyobject))
-*(geom_object1::Geometry, geom_object2::Geometry) = Geometry(geom_object1.pyobject[:__mul__](geom_object2.pyobject))
-
-export Circle,Rectangle,Ellipse,Box,Cone,Sphere,generate_mesh
-
 function pyUnitTriangleMesh()
   pycall(fenics.UnitTriangleMesh::PyObject,PyObject::Type)
 end