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Murchie2023 #1164

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Apr 8, 2024
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Murchie2023 #1164

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dd2325a
Adding Murchie2023 ancientmetagenome-environmental_libraries.tsv
ktozdogan Apr 5, 2024
d05609f
Update ancientmetagenome-environmental_samples.tsv
ktozdogan Apr 5, 2024
6344fdd
Adding Murchie2023 CHANGELOG.md
ktozdogan Apr 5, 2024
e37be68
Correction Murchi2023 ancientmetagenome-environmental_libraries.tsv
ktozdogan Apr 5, 2024
b89bcc1
Add missing shotgun sample SET-279
alexhbnr Apr 8, 2024
1ecb84f
Remove extra column
alexhbnr Apr 8, 2024
1700527
Add missing shotgun sample SET-279
alexhbnr Apr 8, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -25,6 +25,7 @@ and this project follows to [Calendar Versioning](https://calver.org/).
#### Ancient Metagenome: Environmental

- Buchwald 2024 10.1093/ismejo/wrad006 (added by @darcy220606)
- Murchie 2023 10.1038/s41467-021-27439-6 (added by @ktozdogan)

### Changed

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8 changes: 8 additions & 0 deletions ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_libraries.tsv
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Expand Up @@ -745,3 +745,11 @@ Buchwald2024 2024 10.1093/ismejo/wrad006 JK138L-6_JK138_StB076_KL77-2_1133_12125
Buchwald2024 2024 10.1093/ismejo/wrad006 StB097L.04_StB097L_StBE116_KL77-1_205_16090_sample ENA PRJEB66300 ERS16400060 StB097L-04_S4 single AccuPrime Pfx DNA none NA NextSeq 2000 PAIRED WGS 108756824 ERR12074391 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/091/ERR12074391/ERR12074391_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/091/ERR12074391/ERR12074391_2.fastq.gz 64a30b89892042ee980f6167872f3038;8ad2573e90787abb75e35d1a8c6e2001 2681344551;2634953174
Buchwald2024 2024 10.1093/ismejo/wrad006 JK138L-7_JK138_StB078_KL77-2_1157_123340_sample ENA PRJEB66300 ERS16400010 JK138L-7_S23 single AccuPrime Pfx DNA none NA NextSeq 2000 PAIRED WGS 137104196 ERR12074396 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/096/ERR12074396/ERR12074396_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/096/ERR12074396/ERR12074396_2.fastq.gz dbeed990050215768322eeea426c1e3b;5623f97ff2761aae1374be2b0afed3b9 3463030331;3351683435
Buchwald2024 2024 10.1093/ismejo/wrad006 JK138L-4_JK138_StB072_KL77-2_1033_106790_sample ENA PRJEB66300 ERS16400012 JK138L-4_S20 single AccuPrime Pfx DNA none NA NextSeq 2000 PAIRED WGS 118774658 ERR12074398 ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/098/ERR12074398/ERR12074398_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR120/098/ERR12074398/ERR12074398_2.fastq.gz e719f89bad45279b2b2a34f873b776b0;72fe0b97fc18d855423f9823329514ff 3013255574;2941193457
Murchie2023 2023 10.1002/edn3.493 MM12-118b ENA PRJNA1004851 SRS18592596 SET-256-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 1653620 SRR25620681 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/081/SRR25620681/SRR25620681_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/081/SRR25620681/SRR25620681_2.fastq.gz 2f878dd37831f8a1c05189d0b9594968;98942f830041e2a361d3f3b303e752d9 63328798;63244066
Murchie2023 2023 10.1002/edn3.493 LLII-12-84-3 ENA PRJNA1004851 SRS18592602 SET-259-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 1445792 SRR25620676 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/076/SRR25620676/SRR25620676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/076/SRR25620676/SRR25620676_2.fastq.gz 80950a98028c10f3b54a1572b9941180;2ad8e68bd6818b32aac5847e2a9eb3dc 55817770;55707670
Murchie2023 2023 10.1002/edn3.493 LLII 12-217-8 ENA PRJNA1004851 SRS18592522 SET-264-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 1407350 SRR25620756 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/056/SRR25620756/SRR25620756_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/056/SRR25620756/SRR25620756_2.fastq.gz 87d367b0ea4515721cf5b75fb29b5d75;87a6c2201b31a2cab9a2fed9f656bbf4 53675800;54115848
Murchie2023 2023 10.1002/edn3.493 BC 4-2B ENA PRJNA1004851 SRS18592524 SET-265-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 1280547 SRR25620753 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/053/SRR25620753/SRR25620753_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/053/SRR25620753/SRR25620753_2.fastq.gz 435858db2ac06141b6c9884ebc846baa;ca6e7fe8dc399b29863300d699867f0a 47448291;48090227
Murchie2023 2023 10.1002/edn3.493 MM12-118b ENA PRJNA1004851 SRS18592483 SET-268-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 2165736 SRR25620795 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/095/SRR25620795/SRR25620795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/095/SRR25620795/SRR25620795_2.fastq.gz 2ca935f9ca50b8a7e1d32568428a5ab6;9de403106d1c76c803fef2e7bd574dd7 59257224;67375031
Murchie2023 2023 10.1002/edn3.493 LLII-12-84-3 ENA PRJNA1004851 SRS18592488 SET-272-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 2086749 SRR25620790 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/090/SRR25620790/SRR25620790_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/090/SRR25620790/SRR25620790_2.fastq.gz c31c76b272937c85415d27a0edc487f1;f12c7c21f7ea0607681a827edd2cfe7f 56764813;57233095
Murchie2023 2023 10.1002/edn3.493 LLII 12-217-8 ENA PRJNA1004851 SRS18592492 SET-274-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 1937626 SRR25620786 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/086/SRR25620786/SRR25620786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/086/SRR25620786/SRR25620786_2.fastq.gz a1b7fcd18dc1d927ea4b21774eb8e77d;39310c846794b735d80bf4d240840f75 53990899;54408454
Murchie2023 2023 10.1002/edn3.493 BC 4-2B ENA PRJNA1004851 SRS18592498 SET-279-SG double KAPA SYBR FAST DNA unknown NA Illumina HiSeq 1500 PAIRED WGS 8442733 SRR25620780 ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/080/SRR25620780/SRR25620780_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR256/080/SRR25620780/SRR25620780_2.fastq.gz f01c2ee2e068f9e13b45f645e76a9e28;784977d4ffccdd0f21839a6f44058944 235287029;235722697
10 changes: 9 additions & 1 deletion ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples.tsv
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Expand Up @@ -652,4 +652,12 @@ Buchwald2024 2024 10.1093/ismejo/wrad006 Shirshov Ridge 56.330 170.699 Pacific O
Buchwald2024 2024 10.1093/ismejo/wrad006 Shirshov Ridge 56.330 170.699 Pacific Ocean faunal,microbial SO201-2-77KL 1133 JK138L-6_JK138_StB076_KL77-2_1133_121250_sample 121300 10.1093/ismejo/wrad006 ocean marine sediment 2009 ENA PRJEB66300 ERS16400011
Buchwald2024 2024 10.1093/ismejo/wrad006 Shirshov Ridge 56.330 170.699 Pacific Ocean faunal,microbial SO201-2-77KL 205 StB097L.04_StB097L_StBE116_KL77-1_205_16090_sample 16100 10.1093/ismejo/wrad006 ocean marine sediment 2009 ENA PRJEB66300 ERS16400060
Buchwald2024 2024 10.1093/ismejo/wrad006 Shirshov Ridge 56.330 170.699 Pacific Ocean faunal,microbial SO201-2-77KL 1157 JK138L-7_JK138_StB078_KL77-2_1157_123340_sample 123300 10.1093/ismejo/wrad006 ocean marine sediment 2009 ENA PRJEB66300 ERS16400010
Buchwald2024 2024 10.1093/ismejo/wrad006 Shirshov Ridge 56.330 170.699 Pacific Ocean faunal,microbial SO201-2-77KL 1033 JK138L-4_JK138_StB072_KL77-2_1033_106790_sample 106800 10.1093/ismejo/wrad006 ocean marine sediment 2009 ENA PRJEB66300 ERS16400012
Buchwald2024 2024 10.1093/ismejo/wrad006 Shirshov Ridge 56.330 170.699 Pacific Ocean faunal,microbial SO201-2-77KL 1033 JK138L-4_JK138_StB072_KL77-2_1033_106790_sample 106800 10.1093/ismejo/wrad006 ocean marine sediment 2009 ENA PRJEB66300 ERS16400012
Murchie2023 2023 10.1002/edn3.493 Upper Goldbottom 63.90 -138.99 Canada faunal,floral,microbial SET-256 2340 MM12-118b 9300 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592596
Murchie2023 2023 10.1002/edn3.493 Lucky Lady II 63.76 -138.89 Canada faunal,floral,microbial SET-259 270 LLII-12-84-3 13300 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592602
Murchie2023 2023 10.1002/edn3.493 Lucky Lady II 63.76 -138.89 Canada faunal,floral,microbial SET-264 137 LLII 12-217-8 15500 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592522
Murchie2023 2023 10.1002/edn3.493 Bear Creek 64.02 -139.24 Canada faunal,floral,microbial SET-265 50 BC 4-2B 30000 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592524
Murchie2023 2023 10.1002/edn3.493 Upper Goldbottom 63.90 -138.99 Canada faunal,floral,microbial SET-268 2340 MM12-118b 9300 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592483
Murchie2023 2023 10.1002/edn3.493 Lucky Lady II 63.76 -138.89 Canada faunal,floral,microbial SET-272 270 LLII-12-84-3 13300 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592488
Murchie2023 2023 10.1002/edn3.493 Lucky Lady II 63.76 -138.89 Canada faunal,floral,microbial SET-274 137 LLII 12-217-8 15500 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592492
Murchie2023 2023 10.1002/edn3.493 Bear Creek 64.02 -139.24 Canada faunal,floral,microbial SET-279 50 BC 4-2B 30000 10.1038/s41467-021-27439-6 archeological site permafrost NA ENA PRJNA1004851 SRS18592498
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