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Merge pull request #1184 from SPAAM-community/Austin2024
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Austin2024
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@jfy133
jfy133 authored Oct 2, 2024
2 parents c85e49c + a7e0477 commit a3487ea
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).

#### Ancient Metagenome: Host Associated

- Austin 2024 10.1038/s41598-024-64818-7 (added by @alexhbnr)

#### Ancient Single Genome: Host Associated

#### Ancient Metagenome: Environmental
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39 changes: 39 additions & 0 deletions ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv
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Expand Up @@ -2560,3 +2560,42 @@ Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_5C SRA PRJNA704183 SRS8307107 R
Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_5D SRA PRJNA704183 SRS8307108 ROM_5D double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 17373684 SRR13769011 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/011/SRR13769011/SRR13769011_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/011/SRR13769011/SRR13769011_2.fastq.gz 9c3a01d9f356fc153a1e57265435b1b4;3ab8bffe5e74c31c8c1836b1a3930515 622824692;622800278
Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_10D SRA PRJNA704183 SRS8307110 ROM_10D double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 18815387 SRR13769009 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/009/SRR13769009/SRR13769009_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/009/SRR13769009/SRR13769009_2.fastq.gz 4e29507f47e163c4a16f64d90fb524f6;ce88879fe292db732dc173eb9536947b 746940101;743714612
Wright2024 2024 10.1016/j.jasrep.2024.104510 ROM_9C SRA PRJNA704183 SRS8307109 ROM_9C double KAPA HiFi HotStart DNA none NA NextSeq 500 PAIRED WGS 21305627 SRR13769010 ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/010/SRR13769010/SRR13769010_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR137/010/SRR13769010/SRR13769010_2.fastq.gz a98a7030ce982a184d2fffda92522465;0d2e767d81008e599b4ad355d906e880 741768144;697486536
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 32 S SRA PRJNA1056444 SRS19976951 ARP32S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 10583702 SRR27336765 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/065/SRR27336765/SRR27336765.fastq.gz 86c06dfd31dbd1412937951105978220 318365820
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 1 T SRA PRJNA1056444 SRS19976950 ARP1T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7075877 SRR27336766 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/066/SRR27336766/SRR27336766.fastq.gz 97b9e10c21fbfbea592b9a4b22f00d13 185529395
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 3 T SRA PRJNA1056444 SRS19976946 ARP3T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9576143 SRR27336770 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/070/SRR27336770/SRR27336770_2.fastq.gz 326db8fdd6b40b9ad021bbd23ba2e6a2;5871c1a7c0bc58f61339ff1acaaafd48 288936031;290833524
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 4 T SRA PRJNA1056444 SRS19976945 ARP4T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9104658 SRR27336771 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/071/SRR27336771/SRR27336771_2.fastq.gz 3db2a3db9e74d314bfff3624d4258a43;26add8ca30f1bb1b5e272d02a6d391ea 263953252;266305253
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 36 S SRA PRJNA1056444 SRS19976944 ARP36S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10133387 SRR27336772 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/072/SRR27336772/SRR27336772_2.fastq.gz 00f6214e52ea308552b531f6b98e9dab;2c8e65014a2c29c1af916788f329590a 282412174;283669657
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 37 S SRA PRJNA1056444 SRS19976943 ARP37S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8053548 SRR27336773 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/073/SRR27336773/SRR27336773.fastq.gz 2bc9540a7876b2cde37de134a43fd1ab 224079948
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 38 S SRA PRJNA1056444 SRS19976941 ARP38S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6981629 SRR27336775 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/075/SRR27336775/SRR27336775.fastq.gz 86a0eb29d15d480f1d21d6f0d971fe0b 203661003
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 23 S SRA PRJNA1056444 SRS19976936 ARP23S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7611865 SRR27336780 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/080/SRR27336780/SRR27336780.fastq.gz c9b2257bd057a3b01ff86da451667486 205937297
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 7 T SRA PRJNA1056444 SRS19976933 ARP7T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 8684182 SRR27336783 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/083/SRR27336783/SRR27336783_2.fastq.gz bdccf8fd7f3fb185704c5a662d67fabd;5a47a6b474b63fb1b6c9da8dfbfe107a 241815809;244071739
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 25 S SRA PRJNA1056444 SRS19976931 ARP25S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6273958 SRR27336785 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/085/SRR27336785/SRR27336785.fastq.gz 8da80aa0fa472062b69ae625dc1cce90 160665516
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 11 T SRA PRJNA1056444 SRS19976930 ARP11T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 72211981 SRR27336786 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/086/SRR27336786/SRR27336786_2.fastq.gz ea1809fe3a24f0f74adf662851d4f8a2;06e6988b6d49ea025e711fa9ba03db9e 2893932572;2897656027
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 10 T SRA PRJNA1056444 SRS19976925 ARP10T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9554303 SRR27336791 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/091/SRR27336791/SRR27336791.fastq.gz f84854ad4c74b80c963460f7caebe1e4 295056642
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 14 T SRA PRJNA1056444 SRS19976924 ARP14T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 10419069 SRR27336792 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/092/SRR27336792/SRR27336792.fastq.gz 180d4ad87c855013366f1eea285c519c 315536714
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 15 T SRA PRJNA1056444 SRS19976923 ARP15T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10372324 SRR27336793 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/093/SRR27336793/SRR27336793_2.fastq.gz af2cae2e025fe7f4283519847f4ed592;a3d0d5d6e54a6cada74b5c4a7848f15d 318422552;320693152
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 27 S SRA PRJNA1056444 SRS19976921 ARP27S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7641407 SRR27336795 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/095/SRR27336795/SRR27336795.fastq.gz 870b420189b9080492568a9702ea91dd 190215393
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 33 S SRA PRJNA1056444 SRS19976917 ARP33S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8021874 SRR27336799 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/099/SRR27336799/SRR27336799.fastq.gz 0e5051e39f7cc54918d191b7cf1142c6 213857106
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 18 T SRA PRJNA1056444 SRS19976916 ARP18T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10186325 SRR27336800 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR27336800/SRR27336800_2.fastq.gz 453a68f17e3c9720e72800ecdd8cce98;30395af6cc1dbd4576bbea5a4abbf5d2 290755947;292840607
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 20 T SRA PRJNA1056444 SRS19976909 ARP20T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9667924 SRR27336807 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/007/SRR27336807/SRR27336807.fastq.gz 8e59cd6406b0ee62211464e22329415c 277056845
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 35 S SRA PRJNA1056444 SRS19976949 ARP35S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9383222 SRR27336767 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/067/SRR27336767/SRR27336767_2.fastq.gz 39338257809d5991cd763047f8515a47;75adb63e27a8147ca9087b6262f5e532 258594123;260623611
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 5 T SRA PRJNA1056444 SRS19976939 ARP5T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 91903089 SRR27336777 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/077/SRR27336777/SRR27336777_2.fastq.gz 540c37af3b13e41ac5cb4066f7c44ce1;f851cf7468fd6df21778c5f7c0da83fb 3470218229;3349904922
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 26 S SRA PRJNA1056444 SRS19976929 ARP26S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 8981889 SRR27336787 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/087/SRR27336787/SRR27336787_2.fastq.gz 98f7e03fb719986d765d04a619967ff2;a276019c4bdda1666f8a6ef7b818e4c5 246416941;248804630
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 12 T SRA PRJNA1056444 SRS19976927 ARP12T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8555439 SRR27336789 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/089/SRR27336789/SRR27336789.fastq.gz 6267d838e47b98d1f73d0c6208e5bf30 225597224
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 16 T SRA PRJNA1056444 SRS19976922 ARP16T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 10531650 SRR27336794 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/094/SRR27336794/SRR27336794.fastq.gz 17bc773fede21903793fe4aa68ddfbfa 278502450
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 17 T SRA PRJNA1056444 SRS19976920 ARP17T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8565580 SRR27336796 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/096/SRR27336796/SRR27336796.fastq.gz 1681cef3418c4f2d0db23066b9b81065 223727317
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 30 S SRA PRJNA1056444 SRS19976913 ARP30S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 84657481 SRR27336803 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/003/SRR27336803/SRR27336803_2.fastq.gz b9b539963408a9f69ab81647b3eda0cd;f0fe648bb898843ebc24667b87c3538c 3226019328;3139472170
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 28 S SRA PRJNA1056444 SRS19976912 ARP28S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 12022723 SRR27336804 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/004/SRR27336804/SRR27336804.fastq.gz 02239626ccb229466112e938c89d69c9 367363663
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 19 T SRA PRJNA1056444 SRS19976910 ARP19T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10756095 SRR27336806 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/006/SRR27336806/SRR27336806_2.fastq.gz f85e92692a446fea2cb7964ff0304dbb;8f2eadc1e01e53af8b88056416537d11 339397625;341715031
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 2 T SRA PRJNA1056444 SRS19976947 ARP2T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 8667136 SRR27336769 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/069/SRR27336769/SRR27336769_2.fastq.gz 9bba995fd448739b035212fc8fe68249;5a271aab1da83f01eec42b60f613885e 241204366;242611835
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 29 S SRA PRJNA1056444 SRS19976942 ARP29S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6609417 SRR27336774 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/074/SRR27336774/SRR27336774.fastq.gz e3195d19e13cd3bfbb31e7544ea0de72 174579176
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 39 S SRA PRJNA1056444 SRS19976940 ARP39S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8256172 SRR27336776 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/076/SRR27336776/SRR27336776.fastq.gz 27c6ef2768e932e832de6fe53de6832e 192691555
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 22 S SRA PRJNA1056444 SRS19976938 ARP22S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6669513 SRR27336778 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/078/SRR27336778/SRR27336778.fastq.gz 6d4c67036bd21e74008e9a497c1d1ed5 169642431
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 24 S SRA PRJNA1056444 SRS19976935 ARP24S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 6643224 SRR27336781 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/081/SRR27336781/SRR27336781.fastq.gz e0f210923464c9398d90e1e9d18ad31d 169289697
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 6 T SRA PRJNA1056444 SRS19976934 ARP6T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 8364558 SRR27336782 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/082/SRR27336782/SRR27336782.fastq.gz b1b10867393cadd19b6c8ac960d5f29a 220240645
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 8 T SRA PRJNA1056444 SRS19976932 ARP8T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9220925 SRR27336784 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/084/SRR27336784/SRR27336784_2.fastq.gz 96bd5a3fea22fcbbe057471997989a6d;4d1fed2b818a945fdadc6f5ea39c0ba0 275741358;277662373
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 9 T SRA PRJNA1056444 SRS19976928 ARP9T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 10355611 SRR27336788 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/088/SRR27336788/SRR27336788_2.fastq.gz 06d08f40189e312701b9a0a804e171e9;a3c7c0a57259dd2701a40e43e87e0800 281990349;285146396
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 21 S SRA PRJNA1056444 SRS19976919 ARP21S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 9230033 SRR27336797 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/097/SRR27336797/SRR27336797_2.fastq.gz 1d690bde3779209972ecf76372a2756b;9c26a02303066236b6cae3e13451b20a 282404086;284232595
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976918 ARP31S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 96719984 SRR27336798 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_2.fastq.gz b88b1d8e4afd3b15ed74b491e1036e4b;6ae95f827831eeb1ce02e91a0e31babc 3651086684;3545748908
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 13 T SRA PRJNA1056444 SRS19976914 ARP13T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7421314 SRR27336802 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/002/SRR27336802/SRR27336802.fastq.gz 5810e74da314eabe751ecec2030edd0c 202442256
Austin2024 2024 10.1038/s41598-024-64818-7 ARP 34 S SRA PRJNA1056444 SRS19976911 ARP34S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9941233 SRR27336805 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/005/SRR27336805/SRR27336805.fastq.gz 6b803041313b9c4ecc29a83ee05dd7f3 255778837
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