Merge pull request #1172 from SPAAM-community/Lebrasseur2024

Lebrasseur2024
SPAAM-community · Jul 14, 2024 · 1174027 · 1174027
2 parents 9b65763 + 21fb153
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -15,6 +15,7 @@ and this project follows to [Calendar Versioning](https://calver.org/).
 
 - Sun 2024 10.1038/s41467-024-47358-6 (added by @aidaanva)
 - Urban 2024 10.1016/j.cub.2024.04.006 (added by @aidaanva)
+- Lebrasseur 2024 10.1093/ve/vead087(added by @YuejiaoHuang)
 
 #### Ancient Metagenome: Environmental
 

diff --git a/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
@@ -3100,3 +3100,8 @@ Sun2024	2024	10.1038/s41467-024-47358-6	XBQM20	GSA	PRJCA020853	SAMC3135942	XBQM2
 Sun2024	2024	10.1038/s41467-024-47358-6	XBQM46	GSA	PRJCA020853	SAMC3135943	XBQM46	double	PfuTurbo Cx Hotstart DNA	full-udg	HiSeq X Ten	SINGLE	Targeted-Capture	16540	CRR927092	fastq_mapped	ftp://download.big.ac.cn/gsa2/CRA013222/CRR927092/CRR927092.fastq.gz	8abe20d7ad71529e7606cf357155ccbc	3868947
 Sun2024	2024	10.1038/s41467-024-47358-6	XBQM125	GSA	PRJCA020853	SAMC3135944	XBQM125	double	PfuTurbo Cx Hotstart DNA	none	HiSeq X Ten	SINGLE	Targeted-Capture	343	CRR927093	fastq_mapped	ftp://download.big.ac.cn/gsa2/CRA013222/CRR927093/CRR927093.fastq.gz	45efa889dc53958b1e64eb13b3a4fbb2	90445
 Sun2024	2024	10.1038/s41467-024-47358-6	11KBM13	GSA	PRJCA020853	SAMC3135945	11KBM13	double	PfuTurbo Cx Hotstart DNA	half-udg	HiSeq X Ten	SINGLE	Targeted-Capture	1690	CRR927094	fastq_mapped	ftp://download.big.ac.cn/gsa2/CRA013222/CRR927094/CRR927094.fastq.gz	c7360f598593b3e4980300f34bca35e4	254052
+Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L5	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	145317698	ERR6466112	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/002/ERR6466112/ERR6466112.fastq.gz	e4e00eb66e236b20020f6d12323ff24d	5064443689
+Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L3	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	164415447	ERR6466110	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/000/ERR6466110/ERR6466110.fastq.gz	3387cbb54cd5593384586c3f70787405	6026604046
+Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L1	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	9413628	ERR6466108	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/008/ERR6466108/ERR6466108.fastq.gz	082fa661d3351c0fac22e2e922dc3795	342573885
+Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L2	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	123717709	ERR6466109	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/009/ERR6466109/ERR6466109.fastq.gz	267fe0d4b684a1cf765ae560abdfbbc3	4352735230
+Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L4	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	141415855	ERR6466111	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/001/ERR6466111/ERR6466111.fastq.gz	7bed95eb12f3d17c93fd6d47c5edfd04	4974034411
diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
@@ -704,3 +704,4 @@ Sun2024	2024	10.1038/s41467-024-47358-6	QuanErGou	43.65	92.16	China	XBQM20	Homo
 Sun2024	2024	10.1038/s41467-024-47358-6	QuanErGou	43.65	92.16	China	XBQM46	Homo sapiens	2900	10.1038/s41467-024-47358-6	virus	Hepatitis B virus	tooth	chromosome	GSA	reference_aligned	PRJCA020853	SAMC3135943
 Sun2024	2024	10.1038/s41467-024-47358-6	QuanErGou	43.65	92.16	China	XBQM125	Homo sapiens	2900	10.1038/s41467-024-47358-6	virus	Hepatitis B virus	bone	chromosome	GSA	reference_aligned	PRJCA020853	SAMC3135944
 Sun2024	2024	10.1038/s41467-024-47358-6	BeiFang	37.13	81.61	China	11KBM13	Homo sapiens	3400	10.1038/s41467-024-47358-6	virus	Hepatitis B virus	tooth	chromosome	GSA	reference_aligned	PRJCA020853	SAMC3135945
+Lebrasseur2024	2024	10.1093/ve/vead087	Kamennyi Ambar 5	52.833	60.367	Russia	UR17x29	Equus caballus	3800	10.1038/s41586-021-04018-9	virus	Equid herpesvirus 4	bone	chromosome	ENA	raw	PRJEB44430	ERS7256200