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Remove neg controls and correct instrument model to match the paper
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alexhbnr committed Oct 4, 2024
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6 changes: 2 additions & 4 deletions ancientmetagenome-environmental/libraries/ancientmetagenome-environmental_libraries.tsv
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Expand Up @@ -820,7 +820,5 @@ Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM17 ENA PRJEB59830 ERS14617140 VM1
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM19 ENA PRJEB59830 ERS14617141 VM19/SedaVM19 double KAPA HiFi Uracil+ none NA Illumina HiSeq 4000 SINGLE WGS 45753766 ERR10878158 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/058/ERR10878158/ERR10878158.fastq.gz a33eb324eaacc1d95b039782686e21c6 1562314048
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM22 ENA PRJEB59830 ERS14617142 VM22/SedaVM22 double KAPA HiFi Uracil+ none NA Illumina HiSeq 4000 SINGLE WGS 21588084 ERR10878159 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/059/ERR10878159/ERR10878159.fastq.gz f3163a72460c74b0b68efd86353f31a5 688511443
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM24 ENA PRJEB59830 ERS14617143 VM24/SedaVM24 double KAPA HiFi Uracil+ none NA Illumina HiSeq 4000 SINGLE WGS 41233122 ERR10878160 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/060/ERR10878160/ERR10878160.fastq.gz 4ffc1d776594654a6da21eb7fdcf4dd3 1355770150
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM26 ENA PRJEB59830 ERS14617144 VM26/SedaVM26 double KAPA HiFi Uracil+ none NA Illumina NovaSeq X PAIRED WGS 13260540 ERR10878162 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/062/ERR10878162/ERR10878162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/062/ERR10878162/ERR10878162_2.fastq.gz aa6a7e6bd013e867070d439082793c7c;b735dfaca779affb718c251a800b9131 323763782;361608906
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM28 ENA PRJEB59830 ERS14617145 VM28/SedaVM28 double KAPA HiFi Uracil+ none NA Illumina NovaSeq X PAIRED WGS 36876202 ERR10878163 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/063/ERR10878163/ERR10878163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/063/ERR10878163/ERR10878163_2.fastq.gz b81b50ea8a3ab61e3ab3fb80dfc6d9ce;5a893ad1006ca2551af05041ab6352d1 959964334;893177531
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 CTRL-2 ENA PRJEB59830 ERS14617146 CTRL-2/SedaCTRL-CZ-16 double KAPA HiFi Uracil+ none NA Illumina NovaSeq X PAIRED WGS 2637916 ERR10878164 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/064/ERR10878164/ERR10878164_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/064/ERR10878164/ERR10878164_2.fastq.gz b283eff799cb236aa37e84fd1e35b937;69df48e803b5cb0512cbff6b0ba99e8f 64789583;73683732
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 LIB-CTRL-1 ENA PRJEB59830 ERS14617147 LIB-CTRL-1/SedaCTRL-LIB-CZ-17 double KAPA HiFi Uracil+ none NA Illumina NovaSeq X PAIRED WGS 431062 ERR10878165 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/065/ERR10878165/ERR10878165_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/065/ERR10878165/ERR10878165_2.fastq.gz 4df5da4cff904a7c440601cb5f9e6860;ad741bb4649f4930a8365a67e058d2d1 9543900;8624688
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM26 ENA PRJEB59830 ERS14617144 VM26/SedaVM26 double KAPA HiFi Uracil+ none NA Illumina NovaSeq 6000 PAIRED WGS 13260540 ERR10878162 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/062/ERR10878162/ERR10878162_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/062/ERR10878162/ERR10878162_2.fastq.gz aa6a7e6bd013e867070d439082793c7c;b735dfaca779affb718c251a800b9131 323763782;361608906
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 VM28 ENA PRJEB59830 ERS14617145 VM28/SedaVM28 double KAPA HiFi Uracil+ none NA Illumina NovaSeq 6000 PAIRED WGS 36876202 ERR10878163 ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/063/ERR10878163/ERR10878163_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR108/063/ERR10878163/ERR10878163_2.fastq.gz b81b50ea8a3ab61e3ab3fb80dfc6d9ce;5a893ad1006ca2551af05041ab6352d1 959964334;893177531
2 changes: 0 additions & 2 deletions ancientmetagenome-environmental/samples/ancientmetagenome-environmental_samples.tsv
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Expand Up @@ -712,5 +712,3 @@ Zampirolo2024 2024 10.1016/j.cub.2024.08.047 Velký Mamut'ák 50.518 15.071 Czec
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 Velký Mamut'ák 50.518 15.071 Czechia faunal,floral,microbial North Wall excavation trench 196 VM24 7000 10.1016/j.cub.2024.08.047 rock shelter sediment 2019 ENA PRJEB59830 ERS14617143
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 Velký Mamut'ák 50.518 15.071 Czechia faunal,floral,microbial North Wall excavation trench 222 VM26 9600 10.1016/j.cub.2024.08.047 rock shelter sediment 2019 ENA PRJEB59830 ERS14617144
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 Velký Mamut'ák 50.518 15.071 Czechia faunal,floral,microbial North Wall excavation trench 236 VM28 9800 10.1016/j.cub.2024.08.047 rock shelter sediment 2019 ENA PRJEB59830 ERS14617145
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 Velký Mamut'ák 50.518 15.071 Czechia faunal,floral,microbial North Wall excavation trench NA CTRL-2 NA 10.1016/j.cub.2024.08.047 rock shelter sediment 2019 ENA PRJEB59830 ERS14617146
Zampirolo2024 2024 10.1016/j.cub.2024.08.047 Velký Mamut'ák 50.518 15.071 Czechia faunal,floral,microbial North Wall excavation trench NA LIB-CTRL-1 NA 10.1016/j.cub.2024.08.047 rock shelter sediment 2019 ENA PRJEB59830 ERS14617147

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