add TRE dirs

SMI · Jun 21, 2024 · 807f52b · 807f52b
1 parent 197bd1d
commit 807f52b
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/software/Freesurfer/Dockerfile b/software/Freesurfer/Dockerfile
@@ -1,7 +1,7 @@
 FROM docker.io/ubuntu@sha256:e9569c25505f33ff72e88b2990887c9dcf230f23259da296eb814fc2b41af999
 
 ARG FREESURFER_VERSION="7.4.1"
-ARG FREESURFER_IMAGE_REVISION="1"
+ARG FREESURFER_IMAGE_REVISION="2"
 ARG FREESURFER_DEB_MD5="bfe85dd76677cfb7ca2b247b9ac6148e"
 
 ENV \
@@ -79,5 +79,7 @@ RUN : \
     && rm "${deb}" \
     && :
 
+RUN mkdir /safe_data /safe_outputs /scratch
+
 RUN groupadd --system nonroot && useradd --no-log-init --system --gid nonroot nonroot
 USER nonroot