Merge pull request #343 from SMI/links

update links for HicServices -> SMI migration

.github/workflows/dotnet-core.yml

@@ -51,7 +51,7 @@ jobs:
           cmd /c rdmpcli\rdmp.exe cmd describe CreateNewImagingDatasetSuite
       - name: Get Imaging Template
         run: |
-          Invoke-WebRequest -Uri https://raw.githubusercontent.com/HicServices/DicomTypeTranslation/main/Templates/CT.it -OutFile D:\a\RdmpDicom\CT.it
+          Invoke-WebRequest -Uri https://raw.githubusercontent.com/SMI/DicomTypeTranslation/main/Templates/CT.it -OutFile D:\a\RdmpDicom\CT.it
       - name: Integration Tests
         run: |
           cmd /c rdmpcli\rdmp.exe cmd NewObject ConnectionStringKeyword MicrosoftSqlServer TrustServerCertificate yes

CHANGELOG.md

@@ -35,7 +35,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Added
 
-- Added MetadataOnly property to FoDicomAnonymiser [#64](https://github.com/HicServices/RdmpDicom/issues/64)
+- Added MetadataOnly property to FoDicomAnonymiser [#64](https://github.com/SMI/RdmpDicom/issues/64)
 
 ## [5.0.10] 2022-06-21
 
@@ -49,7 +49,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## [5.0.8] 2022-05-04
 
 ### Changed
-- Corrected resizing for the SemEHR API query builder - [#236](https://github.com/HicServices/RdmpDicom/issues/236)
+- Corrected resizing for the SemEHR API query builder - [#236](https://github.com/SMI/RdmpDicom/issues/236)
 
 ## [5.0.7] 2022-04-26
 
@@ -395,56 +395,56 @@ Updated to be compatible with RDMP 4.2
 
 - Initial commit from private repo
 
-[Unreleased]: https://github.com/HicServices/RdmpDicom/compare/v7.0.0...develop
-[7.0.0]: https://github.com/HicServices/RdmpDicom/compare/v6.0.2...v7.0.0
-[6.0.2]: https://github.com/HicServices/RdmpDicom/compare/v6.0.1...v6.0.2
-[6.0.1]: https://github.com/HicServices/RdmpDicom/compare/v6.0.0...v6.0.1
-[6.0.0]: https://github.com/HicServices/RdmpDicom/compare/v5.0.12...v6.0.0
-[5.0.12]: https://github.com/HicServices/RdmpDicom/compare/v5.0.11...v5.0.12
-[5.0.11]: https://github.com/HicServices/RdmpDicom/compare/v5.0.10...v5.0.11
-[5.0.10]: https://github.com/HicServices/RdmpDicom/compare/v5.0.9...v5.0.10
-[5.0.9]: https://github.com/HicServices/RdmpDicom/compare/v5.0.8...v5.0.9
-[5.0.8]: https://github.com/HicServices/RdmpDicom/compare/v5.0.7...v5.0.8
-[5.0.7]: https://github.com/HicServices/RdmpDicom/compare/v5.0.6...v5.0.7
-[5.0.6]: https://github.com/HicServices/RdmpDicom/compare/v5.0.5...v5.0.6
-[5.0.5]: https://github.com/HicServices/RdmpDicom/compare/v5.0.4...v5.0.5
-[5.0.4]: https://github.com/HicServices/RdmpDicom/compare/v5.0.3...v5.0.4
-[5.0.3]: https://github.com/HicServices/RdmpDicom/compare/v5.0.2...v5.0.3
-[5.0.2]: https://github.com/HicServices/RdmpDicom/compare/v5.0.1...v5.0.2
-[5.0.1]: https://github.com/HicServices/RdmpDicom/compare/v5.0.0...v5.0.1
-[5.0.0]: https://github.com/HicServices/RdmpDicom/compare/v4.0.2...v5.0.0
-[4.0.2]: https://github.com/HicServices/RdmpDicom/compare/v4.0.0...v4.0.2
-[4.0.0]: https://github.com/HicServices/RdmpDicom/compare/v3.0.1...v4.0.0
-[3.0.1]: https://github.com/HicServices/RdmpDicom/compare/v3.0.0...v3.0.1
-[3.0.0]: https://github.com/HicServices/RdmpDicom/compare/v2.2.4...v3.0.0
-[2.2.4]: https://github.com/HicServices/RdmpDicom/compare/v2.2.3...v2.2.4
-[2.2.3]: https://github.com/HicServices/RdmpDicom/compare/v2.2.2...v2.2.3
-[2.2.2]: https://github.com/HicServices/RdmpDicom/compare/v2.2.1...v2.2.2
-[2.2.1]: https://github.com/HicServices/RdmpDicom/compare/v2.1.11...v2.2.1
-[2.1.11]: https://github.com/HicServices/RdmpDicom/compare/v2.1.10...v2.1.11
-[2.1.10]: https://github.com/HicServices/RdmpDicom/compare/v2.1.9...v2.1.10
-[2.1.9]: https://github.com/HicServices/RdmpDicom/compare/v2.1.8...v2.1.9
-[2.1.8]: https://github.com/HicServices/RdmpDicom/compare/v2.1.7...v2.1.8
-[2.1.7]: https://github.com/HicServices/RdmpDicom/compare/v2.1.6...v2.1.7
-[2.1.6]: https://github.com/HicServices/RdmpDicom/compare/v2.1.5...v2.1.6
-[2.1.5]: https://github.com/HicServices/RdmpDicom/compare/v2.1.4...v2.1.5
-[2.1.4]: https://github.com/HicServices/RdmpDicom/compare/v2.1.3...v2.1.4
-[2.1.3]: https://github.com/HicServices/RdmpDicom/compare/v2.1.2...v2.1.3
-[2.1.2]: https://github.com/HicServices/RdmpDicom/compare/v2.1.1...v2.1.2
-[2.1.1]: https://github.com/HicServices/RdmpDicom/compare/v2.1.0...v2.1.1
-[2.1.0]: https://github.com/HicServices/RdmpDicom/compare/v2.0.9...v2.1.0
-[2.0.9]: https://github.com/HicServices/RdmpDicom/compare/v2.0.8...v2.0.9
-[2.0.8]: https://github.com/HicServices/RdmpDicom/compare/v2.0.7...v2.0.8
-[2.0.7]: https://github.com/HicServices/RdmpDicom/compare/v2.0.6...v2.0.7
-[2.0.6]: https://github.com/HicServices/RdmpDicom/compare/v2.0.5...v2.0.6
-[2.0.5]: https://github.com/HicServices/RdmpDicom/compare/v2.0.4...v2.0.5
-[2.0.4]: https://github.com/HicServices/RdmpDicom/compare/v2.0.3...v2.0.4
-[2.0.3]: https://github.com/HicServices/RdmpDicom/compare/v2.0.2...v2.0.3
-[2.0.2]: https://github.com/HicServices/RdmpDicom/compare/v2.0.1...v2.0.2
-[2.0.1]: https://github.com/HicServices/RdmpDicom/compare/v1.3.2...v2.0.1
-[1.3.2]: https://github.com/HicServices/RdmpDicom/compare/v1.3.1...v1.3.2
-[1.3.1]: https://github.com/HicServices/RdmpDicom/compare/v1.3.0...v1.3.1
-[1.3.0]: https://github.com/HicServices/RdmpDicom/compare/v1.1.0...v1.3.0
-[1.1.0]: https://github.com/HicServices/RdmpDicom/compare/v1.0.2...v1.1.0
-[1.0.2]: https://github.com/HicServices/RdmpDicom/compare/1581c5ae3a12db1873f4cf1a930215750ad2ae14...v1.0.2
-[Tag Elevation]:https://github.com/HicServices/DicomTypeTranslation/tree/develop/DicomTypeTranslation/Elevation
+[Unreleased]: https://github.com/SMI/RdmpDicom/compare/v7.0.0...develop
+[7.0.0]: https://github.com/SMI/RdmpDicom/compare/v6.0.2...v7.0.0
+[6.0.2]: https://github.com/SMI/RdmpDicom/compare/v6.0.1...v6.0.2
+[6.0.1]: https://github.com/SMI/RdmpDicom/compare/v6.0.0...v6.0.1
+[6.0.0]: https://github.com/SMI/RdmpDicom/compare/v5.0.12...v6.0.0
+[5.0.12]: https://github.com/SMI/RdmpDicom/compare/v5.0.11...v5.0.12
+[5.0.11]: https://github.com/SMI/RdmpDicom/compare/v5.0.10...v5.0.11
+[5.0.10]: https://github.com/SMI/RdmpDicom/compare/v5.0.9...v5.0.10
+[5.0.9]: https://github.com/SMI/RdmpDicom/compare/v5.0.8...v5.0.9
+[5.0.8]: https://github.com/SMI/RdmpDicom/compare/v5.0.7...v5.0.8
+[5.0.7]: https://github.com/SMI/RdmpDicom/compare/v5.0.6...v5.0.7
+[5.0.6]: https://github.com/SMI/RdmpDicom/compare/v5.0.5...v5.0.6
+[5.0.5]: https://github.com/SMI/RdmpDicom/compare/v5.0.4...v5.0.5
+[5.0.4]: https://github.com/SMI/RdmpDicom/compare/v5.0.3...v5.0.4
+[5.0.3]: https://github.com/SMI/RdmpDicom/compare/v5.0.2...v5.0.3
+[5.0.2]: https://github.com/SMI/RdmpDicom/compare/v5.0.1...v5.0.2
+[5.0.1]: https://github.com/SMI/RdmpDicom/compare/v5.0.0...v5.0.1
+[5.0.0]: https://github.com/SMI/RdmpDicom/compare/v4.0.2...v5.0.0
+[4.0.2]: https://github.com/SMI/RdmpDicom/compare/v4.0.0...v4.0.2
+[4.0.0]: https://github.com/SMI/RdmpDicom/compare/v3.0.1...v4.0.0
+[3.0.1]: https://github.com/SMI/RdmpDicom/compare/v3.0.0...v3.0.1
+[3.0.0]: https://github.com/SMI/RdmpDicom/compare/v2.2.4...v3.0.0
+[2.2.4]: https://github.com/SMI/RdmpDicom/compare/v2.2.3...v2.2.4
+[2.2.3]: https://github.com/SMI/RdmpDicom/compare/v2.2.2...v2.2.3
+[2.2.2]: https://github.com/SMI/RdmpDicom/compare/v2.2.1...v2.2.2
+[2.2.1]: https://github.com/SMI/RdmpDicom/compare/v2.1.11...v2.2.1
+[2.1.11]: https://github.com/SMI/RdmpDicom/compare/v2.1.10...v2.1.11
+[2.1.10]: https://github.com/SMI/RdmpDicom/compare/v2.1.9...v2.1.10
+[2.1.9]: https://github.com/SMI/RdmpDicom/compare/v2.1.8...v2.1.9
+[2.1.8]: https://github.com/SMI/RdmpDicom/compare/v2.1.7...v2.1.8
+[2.1.7]: https://github.com/SMI/RdmpDicom/compare/v2.1.6...v2.1.7
+[2.1.6]: https://github.com/SMI/RdmpDicom/compare/v2.1.5...v2.1.6
+[2.1.5]: https://github.com/SMI/RdmpDicom/compare/v2.1.4...v2.1.5
+[2.1.4]: https://github.com/SMI/RdmpDicom/compare/v2.1.3...v2.1.4
+[2.1.3]: https://github.com/SMI/RdmpDicom/compare/v2.1.2...v2.1.3
+[2.1.2]: https://github.com/SMI/RdmpDicom/compare/v2.1.1...v2.1.2
+[2.1.1]: https://github.com/SMI/RdmpDicom/compare/v2.1.0...v2.1.1
+[2.1.0]: https://github.com/SMI/RdmpDicom/compare/v2.0.9...v2.1.0
+[2.0.9]: https://github.com/SMI/RdmpDicom/compare/v2.0.8...v2.0.9
+[2.0.8]: https://github.com/SMI/RdmpDicom/compare/v2.0.7...v2.0.8
+[2.0.7]: https://github.com/SMI/RdmpDicom/compare/v2.0.6...v2.0.7
+[2.0.6]: https://github.com/SMI/RdmpDicom/compare/v2.0.5...v2.0.6
+[2.0.5]: https://github.com/SMI/RdmpDicom/compare/v2.0.4...v2.0.5
+[2.0.4]: https://github.com/SMI/RdmpDicom/compare/v2.0.3...v2.0.4
+[2.0.3]: https://github.com/SMI/RdmpDicom/compare/v2.0.2...v2.0.3
+[2.0.2]: https://github.com/SMI/RdmpDicom/compare/v2.0.1...v2.0.2
+[2.0.1]: https://github.com/SMI/RdmpDicom/compare/v1.3.2...v2.0.1
+[1.3.2]: https://github.com/SMI/RdmpDicom/compare/v1.3.1...v1.3.2
+[1.3.1]: https://github.com/SMI/RdmpDicom/compare/v1.3.0...v1.3.1
+[1.3.0]: https://github.com/SMI/RdmpDicom/compare/v1.1.0...v1.3.0
+[1.1.0]: https://github.com/SMI/RdmpDicom/compare/v1.0.2...v1.1.0
+[1.0.2]: https://github.com/SMI/RdmpDicom/compare/1581c5ae3a12db1873f4cf1a930215750ad2ae14...v1.0.2
+[Tag Elevation]:https://github.com/SMI/DicomTypeTranslation/tree/develop/DicomTypeTranslation/Elevation

Documentation/DataLoad.md

@@ -20,7 +20,7 @@ You can create image tables (and an accompanying data load configuration) with t
 
 ![Create Imaging Table](./Images/CreateImagingTables.png)
 
-You can find some [sample templates](https://github.com/HicServices/DicomTypeTranslation/tree/develop/Templates) in the DicomTypeTranslation repository].
+You can find some [sample templates](https://github.com/SMI/DicomTypeTranslation/tree/develop/Templates) in the DicomTypeTranslation repository].
 
 All tables should have a unique primary key e.g. SOPInstanceUID.  Identical duplication is automatically handled when migrating from RAW to STAGING (prior to MERGE with LIVE) so you can use high level fields as primary keys (e.g. StudyInstanceUID) provided all values in all images are the same for that value (e.g. PatientID, PatientBirthDate etc - these are unlikely to change during a study!).
 
@@ -50,4 +50,4 @@ Sometimes there are differences in study/series level tags between images when y
 |[PrimaryKeyCollisionIsolationMutilation](./../Rdmp.Dicom/PipelineComponents/PrimaryKeyCollisionIsolationMutilation.md) | If all the above components failed then you can use this one to isolate the colliding records into a store (and drop them from the data load) |
 
 
-[Image Tables]: #Image-Tables
+[Image Tables]: #Image-Tables

Packages.md

@@ -9,7 +9,7 @@
 
 | Package | Source Code | Version | License | Purpose | Additional Risk Assessment |
 | ------- | ------------| --------| ------- | ------- | -------------------------- |
-| HIC.DicomTypeTranslation | [GitHub](https://github.com/HicServices/DicomTypeTranslation) | [4.0.3](https://www.nuget.org/packages/HIC.DicomTypeTranslation/4.0.3) | [GPL 3.0](https://www.gnu.org/licenses/gpl-3.0.html) | Translate dicom types into C# / database types | |
+| HIC.DicomTypeTranslation | [GitHub](https://github.com/SMI/DicomTypeTranslation) | [4.0.3](https://www.nuget.org/packages/HIC.DicomTypeTranslation/4.0.3) | [GPL 3.0](https://www.gnu.org/licenses/gpl-3.0.html) | Translate dicom types into C# / database types | |
 | HIC.RDMP.Plugin | [GitHub](https://github.com/HicServices/RDMP) | [8.1.0-rc1](https://www.nuget.org/packages/HIC.RDMP.Plugin/8.1.0-rc1) | [GPL 3.0](https://www.gnu.org/licenses/gpl-3.0.html) | Interact with RDMP objects, base classes for plugin components etc | |
 | LibArchive.Net | [GitHub](https://github.com/jas88/libarchive.net) | [0.1.3](https://www.nuget.org/packages/LibArchive.Net/0.1.3) | [BSD] | Access archive formats without the LZMA bugs of SharpCompress | |
 | Terminal.Gui | [GitHub](https://github.com/migueldeicaza/gui.cs) | [1.10.0](https://www.nuget.org/packages/Terminal.Gui/1.10.0) | [MIT] | UIs compatible with RDMP gui command line | |

README.md

@@ -1,4 +1,4 @@
-[![Build status](https://github.com/HicServices/RdmpDicom/actions/workflows/dotnet-core.yml/badge.svg)](https://github.com/HicServices/RdmpDicom/actions/workflows/dotnet-core.yml) [![Total alerts](https://img.shields.io/lgtm/alerts/g/HicServices/RdmpDicom.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/HicServices/RdmpDicom/alerts/) [![NuGet Badge](https://buildstats.info/nuget/HIC.RDMP.Dicom)](https://buildstats.info/nuget/HIC.RDMP.Dicom)
+[![Build status](https://github.com/SMI/RdmpDicom/actions/workflows/dotnet-core.yml/badge.svg)](https://github.com/SMI/RdmpDicom/actions/workflows/dotnet-core.yml) [![Total alerts](https://img.shields.io/lgtm/alerts/g/SMI/RdmpDicom.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/SMI/RdmpDicom/alerts/) [![NuGet Badge](https://buildstats.info/nuget/HIC.RDMP.Dicom)](https://buildstats.info/nuget/HIC.RDMP.Dicom)
 
 # RdmpDicom
 Plugin for [RDMP](https://github.com/HicServices/RDMP) that adds support for load, linking (with EHR data in relational databases) and extracting anonymous DICOM images for researchers.
@@ -9,7 +9,7 @@ Plugin for [RDMP](https://github.com/HicServices/RDMP) that adds support for loa
 The following demo shows how to deploy and use the RDMP dicom plugin:
 https://youtu.be/j42hmVZKRb4
 
-Releases of the Rdmp.Dicom plugin are hosted in the [Releases section of this Github Repository](https://github.com/HicServices/RdmpDicom/releases).  Once you have downloaded the plugin you can add it to your RDMP instance through the Plugins node in the Tables collection:
+Releases of the Rdmp.Dicom plugin are hosted in the [Releases section of this Github Repository](https://github.com/SMI/RdmpDicom/releases).  Once you have downloaded the plugin you can add it to your RDMP instance through the Plugins node in the Tables collection:
 
 ![Overview](./Documentation/Images/AddPlugin.png)
 

Rdmp.Dicom.Library.nuspec

@@ -6,8 +6,8 @@
         <title>HIC.RDMP.Dicom</title>
         <authors>Health Informatics Centre, University of Dundee</authors>
         <owners>Health Informatics Centre, University of Dundee</owners>
-        <licenseUrl>https://raw.githubusercontent.com/HicServices/RdmpDicom/master/LICENSE</licenseUrl>
-        <projectUrl>https://github.com/HicServices/RdmpDicom</projectUrl>
+        <licenseUrl>https://raw.githubusercontent.com/SMI/RdmpDicom/master/LICENSE</licenseUrl>
+        <projectUrl>https://github.com/SMI/RdmpDicom</projectUrl>
         <iconUrl>https://raw.githubusercontent.com/HicServices/RDMP/master/Application/ResearchDataManagementPlatform/Icon/main.png</iconUrl>
         <requireLicenseAcceptance>false</requireLicenseAcceptance>
         <description>Rdmp library containing Dicom attachers, Dicom server cache sources etc.</description>