Skip to content
This repository has been archived by the owner on Jul 18, 2024. It is now read-only.

Assymetric pattern fix #5

Open
wants to merge 18 commits into
base: master
Choose a base branch
from
Open

Assymetric pattern fix #5

wants to merge 18 commits into from

Conversation

arashgmn
Copy link

@arashgmn arashgmn commented Jun 24, 2021 •
edited
Loading

This fixes the asymmetric pattern issue #2

Axon class

  • The pattern is now made more intuitively for McIntyre's model. Note that as we the structure of the internodal compartments, it's not necessary to compute nstin, nflut, nmysa anymore.

Neural_array_processing

  • A similar approach to the Axon class is applied on generate_pattern module.
  • Refactored

Other minor changes

  • refactoring other files
  • minimal comments added to some function

arashgmn and others added 18 commits May 15, 2021 16:09
@arashgmn
unstage my additional directories
3a99c0b
@arashgmn
some refactoring
d6f1315
@arashgmn
Update Launcher_OSS_lite.py
a09bd83 
to resolve the conflict
@arashgmn
Update MRI_DTI_prep_new.py
0af3482 
to resolve the conflict
@arashgmn
Merge pull request #1 from SFB-ELAINE/master
2ba15a9 
Updated neuronal array
@arashgmn
corrected the Axon class for McIntyre's model
b8d2c66
@arashgmn
Merge branch 'SFB-ELAINE:master' into master
5722f40
@arashgmn
more refactoring
0fd0591
@arashgmn
update gitignore to skip pycache folders
2a8ea43
@arashgmn
restoring to the default input_dict
39be161
@arashgmn
fixed assymetric pattern in Neural_array_processing + updated gitignore
9336d9f
@arashgmn
cylindrical array generation + visualization of grid/cylindrical vta
b10263a
@arashgmn
fixed the nifti affine transfromation for LeadDBS
3a4fa2d
@arashgmn
Merge branch 'SFB-ELAINE:master' into master
a9b1baa
@arashgmn
axisymmetric array generator and its visualzier
2ceb064
@arashgmn
Merge branch 'master' of https://github.com/arashgmn/OSS-DBS
c42e76d
@arashgmn
fixed Neural array processing check3 flag
ab354ef
@arashgmn
fix figsize upon saving
6d1b3fe
@arashgmn
Copy link
Author

Additional features:

  • method for generating cylindrical array around the lead for VTA calculation
  • method for fast visualizing VTA for both grid and cylindrical VTA type

Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@arashgmn