Docs built for commit f005414

SDM-TIB · Dec 1, 2023 · 2a0473a · 2a0473a
1 parent 6dec613
commit 2a0473a
Show file tree

Hide file tree

Showing 13 changed files with 40 additions and 33 deletions.
diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: c73703d7f3f36c3bdba4db08b4dcca94
+config: 5755cdc98f344417c3ea7af0a124baad
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_static/documentation_options.js b/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.14.0',
+    VERSION: '0.15.0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/changelog.html b/changelog.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Changelog &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>Changelog &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -34,7 +34,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
@@ -84,6 +84,19 @@
 <h1>Changelog<a class="headerlink" href="#changelog" title="Permalink to this heading"></a></h1>
 <div class="toctree-wrapper compound">
 </div>
+<section id="v0-15-0-01-dec-2023">
+<h2>v0.15.0 - 01 Dec 2023<a class="headerlink" href="#v0-15-0-01-dec-2023" title="Permalink to this heading"></a></h2>
+<ul class="simple">
+<li><p>Merge parsers</p>
+<ul>
+<li><p>DeTrusty uses only one parser now, hence,</p></li>
+<li><p>Deprecate sparql_one_dot_one parameter or run_query()</p></li>
+</ul>
+</li>
+<li><p>Add support for parsing SPARQL queries with comments</p></li>
+<li><p>Fix issue with COUNT(*)</p></li>
+</ul>
+</section>
 <section id="v0-14-0-28-nov-2023">
 <h2>v0.14.0 - 28 Nov 2023<a class="headerlink" href="#v0-14-0-28-nov-2023" title="Permalink to this heading"></a></h2>
 <ul class="simple">

diff --git a/decomposition.html b/decomposition.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Decomposition Types &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>Decomposition Types &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -34,7 +34,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/genindex.html b/genindex.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Index-Template &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>Index-Template &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -31,7 +31,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/index.html b/index.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>DeTrusty &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>DeTrusty &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -33,7 +33,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/library.html b/library.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>DeTrusty as a Library &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>DeTrusty as a Library &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -34,7 +34,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
@@ -158,7 +158,7 @@ <h2>Executing Queries<a class="headerlink" href="#executing-queries" title="Perm
 <p>DeTrusty offers the function <code class="docutils literal notranslate"><span class="pre">run_query</span></code> for executing SPARQL queries.</p>
 <dl class="py function">
 <dt class="sig sig-object py">
-<span class="sig-name descname"><span class="pre">run_query</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">query</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decomposition_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'STAR'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sparql_one_dot_one</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">join_stars_locally</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">print_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">yasqe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span></dt>
+<span class="sig-name descname"><span class="pre">run_query</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">query</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decomposition_type</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'STAR'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sparql_one_dot_one</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">config</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">join_stars_locally</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">print_result</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">yasqe</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span></dt>
 <dd><p>Executes a SPARQL query over a federation of SPARQL endpoints.</p>
 <p>The SPARQL query is decomposed based on the specified decomposition type.
 DeTrusty identifies the possible sources for each sub-query using the
@@ -173,9 +173,10 @@ <h2>Executing Queries<a class="headerlink" href="#executing-queries" title="Perm
 are ‘STAR’ for a star-shaped decomposition, ‘EG’ for exclusive groups decomposition,
 and ‘TRIPLE’ for a triple-wise decomposition, i.e., each triple pattern of the query
 produces a sub-query. Default is ‘STAR’.</p></li>
-<li><p><strong>sparql_one_dot_one</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.12)"><em>bool</em></a><em>, </em><em>optional</em>) – Indicates whether the query includes the SERVICE clause.
-‘True’ meaning the SERVICE clause is present in the query, ‘False’ otherwise.
-Default is ‘False’.</p></li>
+<li><p><strong>sparql_one_dot_one</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.12)"><em>bool</em></a><em>, </em><em>optional</em>) – <div class="deprecated">
+<p><span class="versionmodified deprecated">Deprecated since version 0.15.0: </span>No longer needed. DeTrusty is using one parser now.</p>
+</div>
+</p></li>
 <li><p><strong>config</strong> (<em>DeTrusty.Molecule.MTManager.Config</em><em>, </em><em>optional</em>) – The configuration holding the metadata about the federation over which the
 SPARQL query should be executed. If no value is specified, DeTrusty will
 attempt to load the configuration from <cite>./Config/rdfmts.json</cite>.</p></li>

diff --git a/objects.inv b/objects.inv
@@ -1,5 +1,5 @@
 # Sphinx inventory version 2
 # Project: DeTrusty
-# Version: 0.14.0
+# Version: 0.15.0
 # The remainder of this file is compressed using zlib.
 xڅRMk� ��+zN����ͥ���콸:5����R�}��[��ޜ�1�FF��*4Ny�N@����c��KɄG�U���$��z�Y�~C��0�湏{�-�ᜭ0�V�++�(�4;�[Y'i���o��8#1�V[��m��&���d��<�R�x���r�ZV�s'��(69yb�]!�����`�S���.1�뾍��'z��oVI�`򽗒!�bl�$,I��_��U�t�8CG_0$�����΢i���s.��K�>
diff --git a/reference.html b/reference.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>References &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>References &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -33,7 +33,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/search.html b/search.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Search &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>Search &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -34,7 +34,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="#" method="get">

diff --git a/searchindex.js b/searchindex.js
diff --git a/service.html b/service.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>DeTrusty as a Service &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>DeTrusty as a Service &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -34,7 +34,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
@@ -266,13 +266,6 @@ <h3>API: Executing Queries<a class="headerlink" href="#api-executing-queries" ti
 metadata about the result verification is included in the key <code class="docutils literal notranslate"><span class="pre">__meta__</span></code>.
 The current version returns all results as verified as can be seen in the key <code class="docutils literal notranslate"><span class="pre">is_verified</span></code> of the metadata.</p></li>
 </ul>
-<div class="admonition note">
-<p class="admonition-title">Note</p>
-<p>When posting a SPARQL 1.1 query with the SERVICE clause, you need to set the <code class="docutils literal notranslate"><span class="pre">sparql1_1</span></code> flag as shown below.</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>curl<span class="w"> </span>-X<span class="w"> </span>POST<span class="w"> </span>-d<span class="w"> </span><span class="s2">&quot;sparql1_1=True&quot;</span><span class="w"> </span>-d<span class="w"> </span><span class="s2">&quot;query=SELECT DISTINCT ?covidDrug WHERE { SERVICE &lt;https://labs.tib.eu/sdm/covid19kg/sparql&gt; { ?treatment &lt;http://research.tib.eu/covid-19/vocab/hasCovidDrug&gt; ?covidDrug . }} LIMIT 3&quot;</span><span class="w"> </span>localhost:5000/sparql
-</pre></div>
-</div>
-</div>
 </section>
 </section>
 </section>

diff --git a/source_description.html b/source_description.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Source Descriptions &mdash; DeTrusty 0.14.0 documentation</title>
+  <title>Source Descriptions &mdash; DeTrusty 0.15.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
@@ -34,7 +34,7 @@
             <img src="_static/logo.png" class="logo" alt="Logo"/>
           </a>
               <div class="version">
-                0.14.0
+                0.15.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">