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update golden files
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@tramyn
tramyn committed Oct 26, 2020
1 parent d788144 commit 90b8ef4
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Showing 3 changed files with 123 additions and 27 deletions.
2 changes: 1 addition & 1 deletion intent_parser/tests/data/mock_data/YeastSTATES 1.0 Growth Curves Request.json
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@@ -1,6 +1,6 @@
{
"challenge_problem": "YEAST_STATES",
"doc_revision_id": "357",
"doc_revision_id": "570",
"experiment_id": "experiment.transcriptic.2020-05-04-YeastSTATES-1-0-Growth-Curves",
"experiment_reference": "YeastSTATES-1-0-Growth-Curves",
"experiment_reference_url": "https://docs.google.com/document/d/1fFcxyJyheMrzSsVoSsO6v7qHJKFf_0heIFtqEur02cg",
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146 changes: 121 additions & 25 deletions intent_parser/tests/data/mock_data/YeastSTATES 1.0 Time Series Round 1.json
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@@ -1,6 +1,6 @@
{
"challenge_problem": "YEAST_STATES",
"doc_revision_id": "442",
"doc_revision_id": "975",
"experiment_id": "experiment.transcriptic.2020-07-10-YeastSTATES-1-0-Time-Series-Round-1",
"experiment_reference": "YeastSTATES-1-0-Time-Series-Round-1",
"experiment_reference_url": "https://docs.google.com/document/d/1Mba6kqDila4W32Z46NEqXZFx868A3O36I9GIVOvMQ70",
Expand Down Expand Up @@ -81,7 +81,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -101,7 +105,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -121,7 +129,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -141,7 +153,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -162,7 +178,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -183,7 +203,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -204,7 +228,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -225,7 +253,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand Down Expand Up @@ -326,7 +358,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -346,7 +382,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -366,7 +406,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -386,7 +430,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -407,7 +455,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -428,7 +480,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -449,7 +505,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -470,7 +530,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand Down Expand Up @@ -931,7 +995,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -951,7 +1019,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -971,7 +1043,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -991,7 +1067,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/W303/1"
{
"lab_id": "name.transcriptic.W303",
"label": "W303",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/W303/1"
}
],
"timepoints": [
{
Expand All @@ -1012,7 +1092,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -1033,7 +1117,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -1054,7 +1142,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
Expand All @@ -1075,7 +1167,11 @@
}
],
"strains": [
"https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
{
"lab_id": "name.transcriptic.UWBF_6390",
"label": "UWBF_6390",
"sbh_uri": "https://hub.sd2e.org/user/sd2e/design/UWBF_6390/1"
}
],
"timepoints": [
{
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2 changes: 1 addition & 1 deletion intent_parser/tests/test_controls_table.py
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Original file line number Diff line number Diff line change
Expand Up @@ -91,7 +91,7 @@ def test_table_with_1_timepoint(self):
self.assertEqual(1, len(control_result))
timepoint = control_result[0][dc_constants.TIMEPOINTS]
expected_timepoint = {dc_constants.VALUE: 8.0, dc_constants.UNIT: 'hour'}
self.assertEqual(timepoint, expected_timepoint)
self.assertEqual(expected_timepoint, timepoint[0])

def test_strains_with_uris(self):
ip_table = test_utils.create_fake_controls_table()
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