fixing person_rank call #228
Workflow file for this run
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| name: Core Testing | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| env: | |
| CACHE_NUMBER: 0 # increase to reset cache manually | |
| jobs: | |
| foundation: | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: linux-64-py${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: asim-test | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set cache date for year and month | |
| run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: /usr/share/miniconda3/envs/asim-test | |
| key: linux-64-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
| mamba install --yes \ | |
| "psutil=5.9.5" \ | |
| "pydantic=2.6.1" \ | |
| "pypyr=5.8.0" \ | |
| "pytables=3.6.1" \ | |
| "pytest-cov" \ | |
| "pytest-regressions=2.5.0" \ | |
| "scikit-learn=1.2.2" \ | |
| "sharrow>=2.6.0" \ | |
| "simwrapper=1.8.5" \ | |
| "xarray=2023.2.0" \ | |
| "zarr=2.14.2" \ | |
| "zstandard=0.21.0" | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install activitysim | |
| # installing without dependencies is faster, we trust that all needed dependencies | |
| # are in the conda environment defined above. Also, this avoids pip getting | |
| # confused and reinstalling tables (pytables). | |
| run: | | |
| python -m pip install -e . --no-deps | |
| - name: Conda checkup | |
| run: | | |
| mamba info -a | |
| mamba list | |
| - name: Lint with Black | |
| run: | | |
| # stop the build if there are problems | |
| black --check --diff . | |
| - name: Test activitysim.core | |
| run: | | |
| python -m pytest --pyargs activitysim.core | |
| - name: Test activitysim.abm.models | |
| run: | | |
| python -m pytest --pyargs activitysim.abm.models | |
| - name: Test activitysim.abm.test | |
| run: | | |
| python -m pytest --pyargs activitysim.abm.test | |
| - name: Test activitysim.cli | |
| run: | | |
| python -m pytest --pyargs activitysim.cli | |
| - name: Test activitysim.examples.test | |
| run: | | |
| python -m pytest --pyargs activitysim.examples.test | |
| cross-platform: | |
| # also test foundation cross platforms, but do not require a successful | |
| # completion before starting regional model tests | |
| needs: foundation | |
| strategy: | |
| matrix: | |
| include: | |
| - os: macos-latest | |
| label: macOS | |
| prefix: /Users/runner/miniconda3/envs/asim-test | |
| python-version: "3.10" | |
| - os: windows-latest | |
| label: win-64 | |
| prefix: C:\Miniconda3\envs\asim-test | |
| python-version: "3.10" | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: asim-test | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set cache date for year and month | |
| run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ matrix.prefix }} | |
| key: ${{ matrix.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
| mamba install --yes \ | |
| "psutil=5.9.5" \ | |
| "pydantic=2.6.1" \ | |
| "pypyr=5.8.0" \ | |
| "pytables=3.6.1" \ | |
| "pytest-cov" \ | |
| "pytest-regressions=2.5.0" \ | |
| "scikit-learn=1.2.2" \ | |
| "sharrow>=2.6.0" \ | |
| "simwrapper=1.8.5" \ | |
| "xarray=2023.2.0" \ | |
| "zarr=2.14.2" \ | |
| "zstandard=0.21.0" | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install activitysim | |
| # installing without dependencies is faster, we trust that all needed dependencies | |
| # are in the conda environment defined above. Also, this avoids pip getting | |
| # confused and reinstalling tables (pytables). | |
| run: | | |
| python -m pip install -e . --no-deps | |
| - name: Conda checkup | |
| run: | | |
| mamba info -a | |
| mamba list | |
| - name: Lint with Black | |
| run: | | |
| # stop the build if there are problems | |
| black --check --diff . | |
| - name: Test activitysim.core | |
| run: | | |
| python -m pytest --pyargs activitysim.core | |
| - name: Test activitysim.abm.models | |
| run: | | |
| python -m pytest --pyargs activitysim.abm.models | |
| - name: Test activitysim.abm.test | |
| run: | | |
| python -m pytest --pyargs activitysim.abm.test | |
| - name: Test activitysim.cli | |
| run: | | |
| python -m pytest --pyargs activitysim.cli | |
| builtin_regional_models: | |
| needs: foundation | |
| env: | |
| mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
| python-version: "3.10" | |
| label: linux-64 | |
| strategy: | |
| matrix: | |
| region: | |
| - prototype_mtc | |
| - prototype_arc | |
| - placeholder_psrc | |
| - prototype_marin | |
| - prototype_mtc_extended | |
| - placeholder_sandag | |
| - prototype_sandag_xborder | |
| - production_semcog | |
| - prototype_mwcog | |
| - placeholder_multiple_zone | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: ${{ matrix.region }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: asim-test | |
| use-mamba: true | |
| python-version: ${{ env.python-version }} | |
| - name: Set cache date for year and month | |
| run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.mamba-env-prefix }} | |
| key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
| mamba install --yes \ | |
| "psutil=5.9.5" \ | |
| "pydantic=2.6.1" \ | |
| "pypyr=5.8.0" \ | |
| "pytables=3.6.1" \ | |
| "pytest-cov" \ | |
| "pytest-regressions=2.5.0" \ | |
| "scikit-learn=1.2.2" \ | |
| "sharrow>=2.6.0" \ | |
| "simwrapper=1.8.5" \ | |
| "xarray=2023.2.0" \ | |
| "zarr=2.14.2" \ | |
| "zstandard=0.21.0" | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install activitysim | |
| # installing without dependencies is faster, we trust that all needed dependencies | |
| # are in the conda environment defined above. Also, this avoids pip getting | |
| # confused and reinstalling tables (pytables). | |
| run: | | |
| python -m pip install -e . --no-deps | |
| - name: Conda checkup | |
| run: | | |
| mamba info -a | |
| mamba list | |
| # TODO: Cache sharrow compiled flows? The contents of __pycache__ appear to | |
| # be ignored, so this is not working as expected right now | |
| # | |
| # - name: Define Inputs | |
| # run: echo "REGION_DEFS=activitysim/examples/${{ matrix.region }}/** " >> $GITHUB_ENV | |
| # | |
| # - name: Get a random number | |
| # run: echo "RANDOM_SUFFIX=${RANDOM}${RANDOM}" >> $GITHUB_ENV | |
| # | |
| # - uses: actions/cache@v3 | |
| # # store the regional model's cache directory in github actions cache | |
| # # this will (almost) never hit on primary key due to the random number | |
| # # but will pull the most recent cache from restore-keys... and then | |
| # # update the cache with additional compiled flows as needed. | |
| # # Hoping this will result in fewer re-compiles on tests and faster | |
| # # testing overall | |
| # with: | |
| # path: activitysim/examples/${{ matrix.region }}/test/output/cache | |
| # key: ${{ matrix.region }}-${{ env.label }}-${{ hashFiles(env.REGION_DEFS) }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }}-${{ env.RANDOM_SUFFIX }} | |
| # restore-keys: | | |
| # ${{ matrix.region }}-${{ env.label }}-${{ hashFiles(env.REGION_DEFS) }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| # id: cache-example | |
| - name: Test ${{ matrix.region }} | |
| run: | | |
| python -m pytest activitysim/examples/${{ matrix.region }}/test --durations=0 | |
| external_regional_models: | |
| needs: foundation | |
| env: | |
| mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
| python-version: "3.10" | |
| label: linux-64 | |
| strategy: | |
| matrix: | |
| region: | |
| - prototype_mtc | |
| - prototype_psrc_in_development | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: ${{ matrix.region }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: asim-test | |
| use-mamba: true | |
| python-version: ${{ env.python-version }} | |
| - name: Set cache date for year and month | |
| run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ${{ env.mamba-env-prefix }} | |
| ~/.cache/ActivitySim | |
| key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
| mamba install --yes \ | |
| "psutil=5.9.5" \ | |
| "pydantic=2.6.1" \ | |
| "pypyr=5.8.0" \ | |
| "pytables=3.6.1" \ | |
| "pytest-cov" \ | |
| "pytest-regressions=2.5.0" \ | |
| "scikit-learn=1.2.2" \ | |
| "sharrow>=2.6.0" \ | |
| "simwrapper=1.8.5" \ | |
| "xarray=2023.2.0" \ | |
| "zarr=2.14.2" \ | |
| "zstandard=0.21.0" | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install activitysim | |
| # installing without dependencies is faster, we trust that all needed dependencies | |
| # are in the conda environment defined above. Also, this avoids pip getting | |
| # confused and reinstalling tables (pytables). | |
| run: | | |
| python -m pip install -e . --no-deps | |
| - name: Conda checkup | |
| run: | | |
| mamba info -a | |
| mamba list | |
| - name: Test ${{ matrix.region }} | |
| run: | | |
| python -m activitysim test ${{ matrix.region }} | |
| random_seed_generation: | |
| needs: foundation | |
| env: | |
| mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
| python-version: "3.10" | |
| label: linux-64 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: random_seed_generation_test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: asim-test | |
| use-mamba: true | |
| python-version: ${{ env.python-version }} | |
| - name: Set cache date for year and month | |
| run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.mamba-env-prefix }} | |
| key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
| mamba install --yes \ | |
| "psutil=5.9.5" \ | |
| "pydantic=2.6.1" \ | |
| "pypyr=5.8.0" \ | |
| "pytables=3.6.1" \ | |
| "pytest-cov" \ | |
| "pytest-regressions=2.5.0" \ | |
| "scikit-learn=1.2.2" \ | |
| "sharrow>=2.6.0" \ | |
| "simwrapper=1.8.5" \ | |
| "xarray=2023.2.0" \ | |
| "zarr=2.14.2" \ | |
| "zstandard=0.21.0" | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install activitysim | |
| # installing without dependencies is faster, we trust that all needed dependencies | |
| # are in the conda environment defined above. Also, this avoids pip getting | |
| # confused and reinstalling tables (pytables). | |
| run: | | |
| python -m pip install -e . --no-deps | |
| - name: Conda checkup | |
| run: | | |
| mamba info -a | |
| mamba list | |
| - name: Test Random Seed Generation | |
| run: | | |
| python -m pytest test/random_seed/test_random_seed.py --durations=0 | |
| estimation_mode: | |
| needs: foundation | |
| env: | |
| mamba-env-prefix: /usr/share/miniconda3/envs/asim-test | |
| python-version: "3.10" | |
| label: linux-64 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: estimation_mode_test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: asim-test | |
| use-mamba: true | |
| python-version: ${{ env.python-version }} | |
| - name: Set cache date for year and month | |
| run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.mamba-env-prefix }} | |
| key: ${{ env.label }}-conda-${{ hashFiles('conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| mamba env update -n asim-test -f conda-environments/github-actions-tests.yml | |
| mamba install --yes \ | |
| "psutil=5.9.5" \ | |
| "pydantic=2.6.1" \ | |
| "pypyr=5.8.0" \ | |
| "pytables=3.6.1" \ | |
| "pytest-cov" \ | |
| "pytest-regressions=2.5.0" \ | |
| "scikit-learn=1.2.2" \ | |
| "sharrow>=2.6.0" \ | |
| "simwrapper=1.8.5" \ | |
| "xarray=2023.2.0" \ | |
| "zarr=2.14.2" \ | |
| "zstandard=0.21.0" | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install Larch | |
| run: mamba install "larch>=5.7.1" | |
| - name: Install activitysim | |
| # installing without dependencies is faster, we trust that all needed dependencies | |
| # are in the conda environment defined above. Also, this avoids pip getting | |
| # confused and reinstalling tables (pytables). | |
| run: | | |
| python -m pip install -e . --no-deps | |
| - name: Conda checkup | |
| run: | | |
| mamba info -a | |
| mamba list | |
| - name: Test Estimation Mode | |
| run: | | |
| python -m pytest activitysim/estimation/test/test_larch_estimation.py --durations=0 | |
| develop-docbuild: | |
| needs: foundation | |
| if: github.ref_name == 'main' | |
| name: develop-docbuild | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # get all tags, lets setuptools_scm do its thing | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| environment-file: conda-environments/docbuild.yml | |
| python-version: "3.10" | |
| activate-environment: docbuild | |
| auto-activate-base: false | |
| auto-update-conda: false | |
| - name: Install activitysim | |
| run: | | |
| python -m pip install . | |
| - name: Conda checkup | |
| run: | | |
| conda info -a | |
| conda list | |
| echo ${{ github.repository }} | |
| echo ${{ github.ref_name }} | |
| - name: localize version switcher | |
| run: | | |
| python .github/workflows/localize-base-urls.py docs/_static/switcher.json | |
| git update-index --assume-unchanged docs/_static/switcher.json | |
| cat docs/_static/switcher.json | |
| - name: Build the docs | |
| run: | | |
| cd docs | |
| make clean | |
| make html | |
| - name: Push to GitHub Pages | |
| uses: peaceiris/[email protected] | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # Token is created automatically by Github Actions, no other config needed | |
| publish_dir: ./docs/_build/html | |
| destination_dir: develop |