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345 Open 719 Closed
345 Open 719 Closed
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Issues list

T2T - TypeError: grid[0] is undefined
#1221 opened Dec 20, 2024 by davmlaw
T2T allele liftover issues
#1220 opened Dec 20, 2024 by davmlaw
@davmlaw
T2T - Quick analysis testing
#1219 opened Dec 20, 2024 by davmlaw
@davmlaw
1
T2T - Annotation description page shows columns that don't exist in build bug Something isn't working
#1218 opened Dec 19, 2024 by davmlaw
T2T - Classification grid dies due to no cached column
#1217 opened Dec 19, 2024 by davmlaw
@davmlaw
T2T - gnomAD liftover contains duplicate entries
#1215 opened Dec 18, 2024 by davmlaw
1
as_symbolic_or_explicit_according_to_size - gives different results depending if starts as symbolic or not bug Something isn't working
#1214 opened Dec 17, 2024 by davmlaw
2
Refactor ColumnVEPField to be simpler data structures
#1213 opened Dec 17, 2024 by davmlaw
Analysis optimisation
#1211 opened Dec 11, 2024 by davmlaw VG4 non-critical
Deployment check improvements
#1210 opened Dec 6, 2024 by davmlaw
@davmlaw
1
Consolidate / Fix broken loading spinners
#1206 opened Nov 27, 2024 by davmlaw
Minor ColumnVCFInfo fixes (Export VCF info)
#1202 opened Nov 21, 2024 by davmlaw
Data - filter to user
#1200 opened Nov 19, 2024 by davmlaw VG4 non-critical
@davmlaw
Make some fields mandatory - eg "tagging" etc
#1199 opened Nov 19, 2024 by davmlaw VG4 non-critical
2
subprocess.CalledProcessError: Command 'bcftools +liftover /mnt/variantgrid/data/import_processing/liftover_4484/source_variants.GRCh37.vcf -- --src-fasta-ref /data/annotation/fasta/Homo_sapiens.GRCh37.75.dna.primary_assembly.fa.gz --fasta-ref /data/annot
#1197 opened Nov 18, 2024 by davmlaw SA Path VG 4
1
Bcftools liftover - reference check alwys fails on symbolic variants Liftover Reference base
#1194 opened Nov 8, 2024 by davmlaw
@davmlaw
1
Annotation Run - restart / fix - improve documentation
#1193 opened Nov 8, 2024 by davmlaw VG4 non-critical
SeqAPI - reload VCF in place
#1192 opened Nov 7, 2024 by davmlaw VG4 non-critical
Reload VCF - sample order switched
#1191 opened Nov 7, 2024 by davmlaw
subprocess.CalledProcessError: Command '['bcftools', 'index', '/mnt/variantgrid/data/import_processing/pipeline_7783/split_vcf/dragen_mutect_vardict_shared00.vcf.gz']' returned non-zero exit status 255.
#1190 opened Nov 6, 2024 by davmlaw
IndexError: list index out of range
#1189 opened Nov 6, 2024 by davmlaw
@davmlaw
LiftoverError - null value in column "conversion_tool"
#1186 opened Oct 23, 2024 by davmlaw
2
Classification - select lab
#1185 opened Oct 21, 2024 by davmlaw SA Path VG 4
DevRecDX? - Simplify code base. Move non-Django scripts into "scripts" folder
#1183 opened Oct 16, 2024 by davmlaw
Investigate Django settings best practices / patterns / libraries etc
#1182 opened Oct 16, 2024 by davmlaw
ProTip! Exclude everything labeled bug with -label:bug.