citations

archive/publications.html

@@ -1121,45 +1121,6 @@ <h2>2000</h2>
 </p>
 
 <br/>
-<h2>1990s</h2>
 
-<p>Booms, P., Cisler, J., Mathews, K. R., Godfrey, M., Tiecke, F., Kaufmann, U. C., Vetter, U., Hagemeier, C., and <b>Robinson, P. N.</b> (1999). Novel exon skipping mutation in the fibrillin-1 gene: two ’hot spots’ for the neonatal Marfan syndrome. <em>Clin. Genet.</em> 55, 110–117.<br/>   <a href="http://www.ncbi.nlm.nih.gov/pubmed/10189088" target="_blank">PubMed</a>  
-</p>
-
-<p>Gille, C., Gille, A., Booms, P., <b>Robinson, P. N.</b>, and Nurnberg, P. (1998). Bipolar clamping improves the sensitivity of mutation detection by temperature gradient gel electrophoresis. <em>Electrophoresis</em> 19, 1347–1350.<br/>   <a href="http://www.ncbi.nlm.nih.gov/pubmed/9694279" target="_blank">PubMed</a>  
-</p>
-
-<p>Booms, P., Withers, A. P., Boxer, M., Kaufmann, U. C., Hagemeier, C., Vetter, U., and <b>Robinson, P. N.</b> (1997). A novel de novo mutation in exon 14 of the fibrillin-1 gene associated with delayed secretion of fibrillin in a patient with a mild Marfan phenotype. <em>Hum. Genet.</em> 100, 195–200.<br/>   <a href="http://www.ncbi.nlm.nih.gov/pubmed/9254848" target="_blank">PubMed</a>  
-</p>
-
-
-	</div>
-
-</article><!-- #post-26 -->
-
-
-
-</div><!-- #content .site-content -->
-</div><!-- #primary .content-area -->
-
-
-
-					</div><!-- .full-container -->
-	</div><!-- #main .site-main -->
-
-
-
-	<footer id="colophon" class="site-footer" role="contentinfo">
-
-	<div id="footer-widgets" class="full-container">
-			</div><!-- #footer-widgets -->
-</footer><!-- #colophon .site-footer -->
-
-</div><!-- #page-wrapper -->
-
-
-<a href="#" id="scroll-to-top" title="Back To Top"><span class="vantage-icon-arrow-up"></span></a><script type='text/javascript' src='js/datepicker.min.js?ver=1.11.4'></script>
 
 
-</body>
-</html>

data/citations.yml

@@ -0,0 +1,23 @@
+--- # Publications
+
+- pmid: 10189088
+  authors: Booms, P., Cisler, J., Mathews, K. R., Godfrey, M., Tiecke, F., Kaufmann, U. C., Vetter, U., Hagemeier, C., and Robinson, P. N.
+  year: 1999
+  title: "Novel exon skipping mutation in the fibrillin-1 gene: two ’hot spots’ for the neonatal Marfan syndrome"
+  journal: Clin Genet
+  volume: 55
+  pages: 110–117
+- pmid: 9694279
+  authors: Gille, C., Gille, A., Booms, P., Robinson, P. N., and Nurnberg, P.
+  year: 1998
+  title: Bipolar clamping improves the sensitivity of mutation detection by temperature gradient gel electrophoresis
+  journal: Electrophoresis
+  volume: 19
+  pages: 1347–1350
+- pmid: 9254848
+  authors: Booms, P., Withers, A. P., Boxer, M., Kaufmann, U. C., Hagemeier, C., Vetter, U., and Robinson, P. N.
+  year: 1997
+  title: A novel de novo mutation in exon 14 of the fibrillin-1 gene associated with delayed secretion of fibrillin in a patient with a mild Marfan phenotype.
+  journal: Hum. Genet
+  volume: 100
+  pages: 195–200

docs/publications.md

@@ -0,0 +1,9 @@
+# Publications
+
+
+Booms, P, Cisler, J, Mathews, KR, Godfrey, M, Tiecke, F, Kaufmann, UC, Vetter, U, Hagemeier, C, and **Robinson, PN**. 1999 Novel exon skipping mutation in the fibrillin-1 gene: two ’hot spots’ for the neonatal Marfan syndrome *Clin Genet* **55**:110–117
+[PMID:10189088](https://pubmed.ncbi.nlm.nih.gov/10189088/)
+Gille, C, Gille, A, Booms, P, **Robinson, PN**, and Nurnberg, P. 1998 Bipolar clamping improves the sensitivity of mutation detection by temperature gradient gel electrophoresis *Electrophoresis* **19**:1347–1350
+[PMID:9694279](https://pubmed.ncbi.nlm.nih.gov/9694279/)
+Booms, P, Withers, AP, Boxer, M, Kaufmann, UC, Hagemeier, C, Vetter, U, and **Robinson, PN**. 1997 A novel de novo mutation in exon 14 of the fibrillin-1 gene associated with delayed secretion of fibrillin in a patient with a mild Marfan phenotype. *Hum. Genet* **100**:195–200
+[PMID:9254848](https://pubmed.ncbi.nlm.nih.gov/9254848/)

scripts/make_pub_page.py

@@ -0,0 +1,52 @@
+import yaml
+import re
+from collections import defaultdict
+
+class Publication:
+
+    def __init__(self, dict):
+        self._pmid = dict.get('pmid', 'n/a')
+        self._authors = dict.get('authors', 'n/a')
+        self._year = int(dict.get('year', 'n/a'))
+        self._title = dict.get('title', 'n/a')
+        self._journal = dict.get('journal', 'n/a')
+        self._volume = dict.get('volume', 'n/a')
+        self._pages = dict.get('pages', 'n/a')
+
+
+    @property
+    def year(self):
+        return self._year
+
+
+    def get_markdown(self):
+        authors = self._authors
+        authors = re.sub(r"\.\s?", "", authors)
+        authors = authors.replace("Robinson, PN", "**Robinson, PN**")
+        mdown = f"{authors}. {self._year} {self._title} *{self._journal}* **{self._volume}**:{self._pages}"
+        if self._pmid is not None:
+            mdown = f"{mdown}\n[PMID:{self._pmid}](https://pubmed.ncbi.nlm.nih.gov/{self._pmid}/)"
+        return mdown
+
+
+
+
+
+
+publication_file = "../data/citations.yml"
+
+pub_d = defaultdict(list)
+
+with open(publication_file, 'r') as fh:
+    publications = yaml.safe_load(fh)
+    for p in publications:
+        pub = Publication(dict=p)
+        year = pub.year
+        pub_d[year].append(pub)
+
+for k, v in pub_d.items():
+    for item in v:
+        print(item.get_markdown())
+
+
+