updates

data/citations.txt

@@ -1,13 +1,101 @@
 -- # Publications
 
 
+-pmid: 38177435
+authors: Cappelletti L, Fontana T, Casiraghi E, Ravanmehr V, Callahan TJ, Cano C, Joachimiak MP, Mungall CJ,  {\bf Robinson PN},  Reese J, Valentini G
+year: 2023
+title: GRAPE for fast and scalable graph processing and random-walk-based embedding
+journal: Nat Comput Sci
+volume: 3(6)
+pages: 552-568
+top: false
+
+
+-pmid: 38383067
+authors: Caufield JH, Hegde H, Emonet V, Harris NL, Joachimiak MP, Matentzoglu N, Kim H, Moxon S, Reese JT, Haendel MA, {\bf Robinson PN}, Mungall CJ
+year: 2024
+title: Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning
+journal: Bioinformatics
+volume: 40(3)
+pages: btae104
+top: false
+
+-pmid: 38577542
+authors: Cappelletti L, Rekerle L, Fontana T, Hansen P, Casiraghi E, Ravanmehr V, Mungall CJ, Yang JJ, Spranger L, Karlebach G, Caufield JH, Carmody L, 
+Coleman B, Oprea TI, Reese J, Valentini G, {\bf Robinson PN}
+year: 2024
+title: Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning
+journal: Bioinform Adv
+volume: 4(1)
+pages: vbae036
+top: false
+
+-pmid: 38605048
+authors: Callahan TJ, Tripodi IJ, Stefanski AL, Cappelletti L, Taneja SB, Wyrwa JM, Casiraghi E, Matentzoglu NA, Reese J, Silverstein JC, 
+Hoyt CT, Boyce RD, Malec SA, Unni DR, Joachimiak MP, {\bf Robinson PN}, Mungall CJ, Cavalleri E, Fontana T, Valentini G, Mesiti M, Gillenwater LA, 
+Santangelo B, Vasilevsky NA, Hoehndorf R, Bennett TD, Ryan PB, Hripcsak G, Kahn MG, Bada M, Baumgartner WA Jr, Hunter LE
+year: 2024
+title: An open source knowledge graph ecosystem for the life sciences
+journal: Sci Data
+volume: 11(1)
+pages: 363
+top: false
+
+-pmid: 38629401
+authors: Cacheiro P, Lawson S, Van den Veyver IB, Marengo G, Zocche D, Murray SA, Duyzend M, {\bf Robinson PN}, Smedley D
+year: 2024
+title: Lethal phenotypes in Mendelian disorders
+journal: Genet Med
+volume: 26(7)
+pages: 101141
+top: false
+
+-pmid: 38643701
+authors: Chan LE, Casiraghi E, Reese J, Harmon QE, Schaper K, Hegde H, Valentini G, Schmitt C, Motsinger-Reif A, Hall JE, 
+	Mungall CJ, {\bf Robinson PN},  Haendel MA
+year: 2024
+title: Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests
+journal: Int J Med Inform
+volume: 187
+pages: 105461
+top: false
+
+
+-pmid: 38951652
+authors: Morgan AT, Coleman B, Vogel AP, McNeill A, {\bf Robinson PN}
+year: 2024
+title: Speech and language classification in the human phenotype ontology
+journal: Eur J Hum Genet
+volume: doi: 10.1038/s41431-024-01635-6
+pages: Epub ahead of print
+top: false
+
+-pmid: 38913850
+authors: Groza T, Gration D, Baynam G, {\bf Robinson PN}
+year: 2024
+title: FastHPOCR: Pragmatic, fast and accurate concept recognition using the Human Phenotype Ontology
+journal: Bioinformatics
+volume: doi: 10.1093/bioinformatics/btae406
+pages: Epub ahead of print
+top: false
+
+-pmid: 38851761
+authors: Coleman B, Casiraghi E, Callahan TJ, Blau H, Chan LE, Laraway B, Clark KB, Re'em Y, Gersing KR, 
+	Wilkins KJ, Harris NL, Valentini G, Haendel MA, Reese JT, {\bf Robinson PN}
+year: 2024
+title: Association of post-COVID phenotypic manifestations with new-onset psychiatric disease
+journal: Transl Psychiatry
+volume: 14(1)
+pages: 246
+top: false
+
 -pmid: 38242839
 authors: Duyzend MH, Cacheiro P, Jacobsen JOB, Giordano J, Brand H, Wapner RJ, Talkowski ME, {\bf Robinson PN}, Smedley D
 year: 2024
 title: Improving prenatal diagnosis through standards and aggregation
 journal: Prenat Diagn
-volume: doi: 10.1002/pd.6522
-pages: Epub ahead of print
+volume: 44(4):
+pages: 454-464
 top: false
 
 -pmid: 38297371
@@ -29,6 +117,15 @@ volume: 39
 pages: btad716
 top: false
 
+-pmid: 38076030
+authors: Valentini G, Malchiodi D, Gliozzo J, Mesiti M, Soto-Gomez M, Cabri A, Reese J, Casiraghi E,, {\bf Robinson PN}
+year: 2023
+title: The promises of large language models for protein design and modeling
+journal: Front Bioinform
+volume: 3
+pages: 1304099
+top: false
+
 -pmid: 38000386
 authors: Putman TE, Schaper K, Matentzoglu N, Rubinetti VP, Alquaddoomi FS, Cox C, Caufield JH, Elsarboukh G, Gehrke S, Hegde H, Reese JT, Braun I, Bruskiewich RM, Cappelletti L, Carbon S, Caron AR, Chan LE, Chute CG, Cortes KG, De Souza V, Fontana T, Harris NL, Hartley EL, Hurwitz E, Jacobsen JOB, Krishnamurthy M, Laraway BJ, McLaughlin JA, McMurry JA, Moxon SAT, Mullen KR, O'Neil ST, Shefchek KA, Stefancsik R, Toro S, Vasilevsky NA, Walls RL, Whetzel PL, Osumi-Sutherland D, Smedley D, {\bf Robinson PN}, Mungall CJ, Haendel MA, Munoz-Torres MC
 year: 2024

docs/contact.md

@@ -19,9 +19,9 @@ Peter Robinson
 </figure>
 
 
-## Berlin Institute of Health (from 2024)
+## Berlin Institute of Health
 
-Starting in January, 2024, the Robinson Lab will be located at the Berlin Institute of Health (BIH) in the 
+The Robinson Lab is located at the Berlin Institute of Health (BIH) in the 
 Rahel Hirsch Center for Translational Medicine of the Charité in Berlin Mitte.
 
 
@@ -34,8 +34,9 @@ Rahel Hirsch Center for Translational Medicine of the Charité in Berlin Mitte.
 
 ## The Jackson Laboratory for Genomic Medicine
 
-The Robinson Lab will also be located at the Jackson Laboratory (JAX) in the
-for Genomic Medicine campus in Farmington Connecticut.
+The Robinson Lab is also located at the Jackson Laboratory (JAX) in the
+for Genomic Medicine (JAX-GM) campus in Farmington Connecticut. 
+The primary location of the Robinson lab from 2016-2023 was at JAX-GM and we are delighted to keep the affiliation.
 
 <figure markdown>
 ![JAX](img/jax.jpg){ width="400" }