Code

HS development merge 240522#141

Code

Merged

RevathiJambunathan merged 122 commits intoRevathiJambunathan:HarrisSheetinXRevathiJambunathan/WarpX:HarrisSheetinXfrom hklion:HSdevmerge_240522hklion/WarpX:HSdevmerge_240522Copy head branch name to clipboardMay 22, 2024

+9,421-5,972

Commits

Commits on Mar 12, 2024

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4763)

  Show description for a689ae9
  ax3l

  authored
  a689ae9

• clean up (ECP-WarpX#4761)

  aeriforme

  authored
  7317aaf

Commits on Mar 13, 2024

• remove superfluous include directives (ECP-WarpX#4770)

  lucafedeli88

  authored
  966efe0

Commits on Mar 14, 2024

• Adding hyper-resistivity to generalized ohms law hybrid solver. (ECP-WarpX#4772)

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  3 peopleauthored
  41983ae

• Doc: Conda -y Install Block (ECP-WarpX#4776)

  Show description for 2630be8
  ax3l

  authored
  2630be8

• Zenodo: Add Justin & Kale as Co-Authors (ECP-WarpX#4760)

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  ax3l

  authored
  467598c

• Compute electrostatic fields at the beginning of EM simulations, if potential is specified (ECP-WarpX#4723)

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  3 peopleauthored
  5f96976

• Better error message when Poisson solver does not have supported boundary (ECP-WarpX#4778)

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  RemiLehe

  and

  pre-commit-ci[bot]

  authored
  e145007

Commits on Mar 15, 2024

• CI: isort + black compatibility (ECP-WarpX#4769)

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  3 peopleauthored
  8c84e79

• fix redundant string init found with clang-tidy (ECP-WarpX#4781)

  lucafedeli88

  authored
  01ee64e

• Remove WarpX:: from ablastr (ECP-WarpX#4782)

  lucafedeli88

  authored
  a8f48ea

Commits on Mar 16, 2024

• Define class function defineAllParticleTiles for NamedComponentParticleContainer (ECP-WarpX#4780)

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  RemiLehe

  authored
  4e568ad

• update ml workflow for pasc revisions (ECP-WarpX#4768)

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  RTSandberg

  authored
  d22e423

Commits on Mar 19, 2024

• Add callbacks after B and E field pushes (ECP-WarpX#4784)

  roelof-groenewald

  authored
  6610e47

• Add UB sanitizer CI test (ECP-WarpX#4783)

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  lucafedeli88

  authored
  0531910

• ApplyPECto Rho and J if partBndry reflecting/FieldBndry PEC (ECP-WarpX#4785)

  Show description for 9b282be
  RevathiJambunathan

  authored
  9b282be

Commits on Mar 20, 2024

• Allow to set the initial potential in PICMI EM simulations (ECP-WarpX#4788)

  RemiLehe

  authored
  2c61bc8

• Add QED lookup tables generator/reader in /Tools (ECP-WarpX#3137)

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  5 peopleauthored
  29a0a56

• fix variable add in picmi lab particle diagnostics (ECP-WarpX#4793)

  RTSandberg

  authored
  dde6f7b

Commits on Mar 21, 2024

• update Adastra doc (ECP-WarpX#4786)

  lucafedeli88

  authored
  1bdd450

• Add function to get total weight of all particles in WarpXParticleContainer (ECP-WarpX#4795)

  roelof-groenewald

  authored
  2b50441

• Electron current diagnostic for Hybrid solver (ECP-WarpX#4336)

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  5 peopleauthored
  32772aa

• Update spacecraft charging test (ECP-WarpX#4792)

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  RemiLehe

  and

  pre-commit-ci[bot]

  authored
  daa8b3b

Commits on Mar 22, 2024

• Document the function add_applied_field in PICMI (ECP-WarpX#4794)

  RemiLehe

  authored
  1381da3

Commits on Mar 23, 2024

• Docs: update hybrid-pic description and parameters (ECP-WarpX#4796)

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  roelof-groenewald

  authored
  e39ead7

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4800)

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  ax3l

  and

  roelof-groenewald

  authored
  964c77e

• Fix a number of compilation warnings (ECP-WarpX#4801)

  Show description for aa8df1c
  roelof-groenewald

  authored
  aa8df1c

Commits on Mar 25, 2024

• Clean up BeamRelevant with TypeMultiplier (ECP-WarpX#4798)

  Show description for 91f3ff1
  n01r

  authored
  91f3ff1

• Fix ParticleHistogram2D (ECP-WarpX#4779)

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  3 peopleauthored
  d7b1aba

• Remove GPUClock Cost Function (ECP-WarpX#4802)

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  ax3l

  authored
  f49a63f

Commits on Mar 26, 2024

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4803)

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  ax3l

  authored
  5857c04

• Cleaning: .rst Ending in TOC (ECP-WarpX#4804)

  Show description for 6b0a040
  ax3l

  authored
  6b0a040

Commits on Mar 28, 2024

• update fugaku_warpx.profile (ECP-WarpX#4808)

  lucafedeli88

  authored
  fdbf455

• Evolve Loop: Simplify (ECP-WarpX#4791)

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  3 peopleauthored
  697fc5b

Commits on Mar 29, 2024

• fix typos in scripts to run WarpX on Frontier (ECP-WarpX#4811)

  lucafedeli88

  authored
  5cfa8f1

Commits on Mar 31, 2024

• Add thermalBC for particles (ECP-WarpX#4790)

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  4 peopleauthored
  72800ea

Commits on Apr 1, 2024

• Clang tidy CI test: add performance-unnecessary-* checks to clang-tidy CI test (ECP-WarpX#4136)

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  lucafedeli88

  and

  dpgrote

  authored
  a5d5432

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4814)

  Show description for e30472d
  ax3l

  authored
  e30472d

• Add clang-tidy workflow (ECP-WarpX#4806)

  Show description for 6a4ebd9
  lucafedeli88

  authored
  6a4ebd9

• Clang tidy CI test: add several clang-analyzer-* checks to clang tidy CI test (ECP-WarpX#4684)

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  lucafedeli88

  and

  pre-commit-ci[bot]

  authored
  0466145

• Doc: Perlmutter Update (ECP-WarpX#4809)

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  ax3l

  authored
  63807df

Commits on Apr 2, 2024

• Printing out the time dependencies of the charge and current densities with multi-J PSATD. (ECP-WarpX#4815)

  oshapoval

  authored
  5a8fdd8

• updated docs about focal distance (ECP-WarpX#4762)

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  aeriforme

  authored
  5e07c80

Commits on Apr 3, 2024

• Implement Poisson solver based on integrated Green functions (ECP-WarpX#4648)

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  5 peopleauthored
  30ed0fb

Commits on Apr 4, 2024

• Fix: ABLASTR FFT Poisson Solver (ECP-WarpX#4821)

  Show description for f013b1f
  ax3l

  authored
  f013b1f

Commits on Apr 5, 2024

• repetitive member var in derived class (ECP-WarpX#4827)

  RevathiJambunathan

  authored
  febd6da

• Release 24.04 (ECP-WarpX#4824)

  Show description for 87e0767
  ax3l

  authored
  87e0767

• Fix outdated element-wise comparison based assertions (ECP-WarpX#4829)

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  roelof-groenewald

  and

  WeiqunZhang

  authored
  e7af8bf

Commits on Apr 8, 2024

• Fix out of bounds memory access in HybridPICModel::GetCurrentExternal (ECP-WarpX#4830)

  roelof-groenewald

  authored
  4a37ffb

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4834)

  Show description for ef6d085
  ax3l

  authored
  ef6d085

• [pre-commit.ci] pre-commit autoupdate (ECP-WarpX#4837)

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  pre-commit-ci[bot]

  authored
  76d6500

• HPC3 (UCI): Fix ADIOS2 HDF5 Build (ECP-WarpX#4836)

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  ax3l

  authored
  9f5be94

• Output the potential phi on the macroparticles (ECP-WarpX#4599)

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  3 peopleauthored
  b4ed706

Commits on Apr 9, 2024

• Remove calls to WarpX::GetInstance() in PEC class and cleaning (ECP-WarpX#4771)

  Show description for 56a00e9
  lucafedeli88

  authored
  56a00e9

• Refactor output of phi on the particles (ECP-WarpX#4839)

  Show description for 5640de3
  RemiLehe

  authored
  5640de3

• Filter rho, when using relativistic electrostatic solver (ECP-WarpX#4823)

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  RemiLehe

  authored
  a3974ff

Commits on Apr 10, 2024

• Fix out of bounds access to distance_to_eb (ECP-WarpX#4831)

  Show description for e19d66b
  roelof-groenewald

  authored
  e19d66b

• Doc: LUMI (CSC) Update (ECP-WarpX#4810)

  Show description for 833813d
  ax3l

  authored
  833813d

• pybind11: v2.12.0 (ECP-WarpX#4844)

  Show description for d8fab99
  ax3l

  authored
  d8fab99

• Add ohms law hybrid multifab redistribution (ECP-WarpX#4848)

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  clarkse

  authored
  7fca905

Commits on Apr 11, 2024

• Use function to remove invalid particles without MPI exchange (ECP-WarpX#4849)

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  RemiLehe

  authored
  2009612

• Use BinaryCollision class for DSMC collisions (ECP-WarpX#4744)

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  3 peopleauthored
  e5b9b52

• Use local deleteInvalidParticles (instead of Redistribute) in binary collisions (ECP-WarpX#4851)

  RemiLehe

  authored
  c8b05b8

Commits on Apr 12, 2024

• Update optimas/libensemble documentation (ECP-WarpX#4854)

  Show description for 8443bce
  RTSandberg

  authored
  8443bce

• Always update guard cells in WarpXSumGuardCells (ECP-WarpX#4840)

  Show description for 5e95faf
  

  RemiLehe

  and

  roelof-groenewald

  authored
  5e95faf

Commits on Apr 15, 2024

• Set OpenMP threads manually on Perlmutter nodes (ECP-WarpX#4857)

  n01r

  authored
  12349a8

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4858)

  Show description for 58e6b8d
  ax3l

  authored
  58e6b8d

• Optimizing GPU acceleration of binary collision algorithms. (ECP-WarpX#4577)

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  4 peopleauthored
  3add009

Commits on Apr 16, 2024

• Add thermal boundary specification to picmi (ECP-WarpX#4850)

  Show description for 6be423e
  roelof-groenewald

  authored
  6be423e

• Add M. Haseeb in the list of developers (ECP-WarpX#4862)

  Show description for 83d8017
  

  RemiLehe

  and

  mhaseeb123

  authored
  83d8017

Commits on Apr 18, 2024

• Update pyAMReX (ECP-WarpX#4870)

  Show description for 3b18ed7
  ax3l

  authored
  3b18ed7

Commits on Apr 19, 2024

• Add function to set value of do_not_push (ECP-WarpX#4868)

  Show description for a082660
  roelof-groenewald

  authored
  a082660

Commits on Apr 22, 2024

• Downgrade Reg Tests (ECP-WarpX#4882)

  Show description for fc94b23
  ax3l

  authored
  fc94b23

• remove unnecessary include of WarpX.H (ECP-WarpX#4877)

  lucafedeli88

  authored
  60e9b8e

• Ensure that only necessary headers are included in FieldAccessorFunctors.H (ECP-WarpX#4878)

  lucafedeli88

  authored
  1d3c837

• remove unnecessary include from FlushFormat.H (ECP-WarpX#4879)

  lucafedeli88

  authored
  b900941

Commits on Apr 23, 2024

• Further downgrade regression_testing (ECP-WarpX#4884)

  lucafedeli88

  authored
  be379d2

• DepositCharge: Component 1 Allocated? (ECP-WarpX#4859)

  Show description for cceae54
  

  ax3l

  and

  roelof-groenewald

  authored
  cceae54

• AMReX: Weekly Update (ECP-WarpX#4881)

  ax3l

  authored
  8344f2c

• Reorder particle boundary handling and call to Redistribute (ECP-WarpX#4852)

  Show description for 8993457
  roelof-groenewald

  authored
  8993457

Commits on Apr 24, 2024

• remove offending calls to pip install in macOS build (ECP-WarpX#4887)

  roelof-groenewald

  authored
  ae50855

• make sure that include guards start with WARPX_ (ECP-WarpX#4876)

  lucafedeli88

  authored
  cbe4355

• Implement grid based merging algorithm (ECP-WarpX#4820)

  Show description for ec175e5
  roelof-groenewald

  authored
  ec175e5

• Remove friend class PML from WarpX class (ECP-WarpX#4874)

  lucafedeli88

  authored
  486e793

• move field type struct in a separate header (ECP-WarpX#4875)

  lucafedeli88

  authored
  206e6d5

• remove call to WarpX::GetInstance() from FilterCreateTransformFromFAB.H (ECP-WarpX#4873)

  lucafedeli88

  authored
  28434e9

• remove calls to WarpX:GetInstance() from MacroscopicProperties.cpp (ECP-WarpX#4872)

  lucafedeli88

  authored
  7e65117

• TNSA Example: Link Domain Decomposition (ECP-WarpX#4885)

  Show description for 10f6f67
  ax3l

  authored
  10f6f67

• fix failing development builds (ECP-WarpX#4890)

  roelof-groenewald

  authored
  94871c7

Commits on Apr 25, 2024

• Great Lakes Cluster (UMich) (ECP-WarpX#4869)

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  ax3l

  authored
  ed7e824

• Open Governance Model (ECP-WarpX#4743)

  Show description for 07f239c
  

  ax3l

  and

  roelof-groenewald

  authored
  07f239c

• openPMD-api: 0.15.2 (ECP-WarpX#4847)

  Show description for bc726a5
  ax3l

  authored
  bc726a5

• Add two missing includes (found with iwyu) (ECP-WarpX#4895)

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  lucafedeli88

  authored
  92fddfc

Commits on Apr 29, 2024

• isort: First Party Modules (ECP-WarpX#4902)

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  ax3l

  and

  pre-commit-ci[bot]

  authored
  2aee638

• Clarify ParticleContainerWrapper.add_particles() docstring (ECP-WarpX#4903)

  jwestern

  authored
  a294ff2

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4904)

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  ax3l

  authored
  155336b

• Doc: Great Lakes ADIOS2 Update (ECP-WarpX#4905)

  Show description for 8dbd3bd
  ax3l

  authored
  8dbd3bd

Commits on Apr 30, 2024

• Fix external fields on grid in 1D (ECP-WarpX#4906)

  RemiLehe

  authored
  c5a5732

Commits on May 2, 2024

• Add option for Cartesian velocity grid with VelocityCoincidenceThinning (ECP-WarpX#4886)

  Show description for 8a9bedc
  roelof-groenewald

  authored
  8a9bedc

Commits on May 3, 2024

• Fix Python installation instructions on Perlmutter (ECP-WarpX#4907)

  RemiLehe

  authored
  bc5d0a2

Commits on May 7, 2024

• Docs: Fix PASC Paper Formatting

  ax3l

  committed
  3f413a3

• Highlights: Fix Formatting Issue

  Show description for 0e2fc85
  ax3l

  committed
  0e2fc85

Commits on May 8, 2024

• make do_current_centering a regular member variable of the WarpX class (ECP-WarpX#4901)

  lucafedeli88

  authored
  4a6ccdc

Commits on May 10, 2024

• Add CI test for velocity coincidence thinning (ECP-WarpX#4919)

  Show description for 98bd725
  roelof-groenewald

  authored
  98bd725

• Amend Notices for Non-Endorsement (ECP-WarpX#4924)

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  ax3l

  authored
  fee6c4e

Commits on May 12, 2024

• Diagnostics: Fix Position Selection (ECP-WarpX#4914)

  Show description for e6c1eb5
  ax3l

  authored
  e6c1eb5

• Resetting charge buffers to zero. (ECP-WarpX#4916)

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  3 peopleauthored
  02f3897

• Update hip installation script for CI (ECP-WarpX#4927)

  Show description for d306905
  WeiqunZhang

  authored
  d306905

Commits on May 13, 2024

• ElectrostaticSphereLabFrame_MR_emass_10: +Positions (ECP-WarpX#4930)

  ax3l

  authored
  4270ca8

• ablastr::particles::compute_weights : implement 1D and use template parameter to specify if field is nodal (ECP-WarpX#4846)

  Show description for 2a3fbda
  

  lucafedeli88

  and

  ax3l

  authored
  2a3fbda

• Remove redundant setVal(0) in ParticleReductionFunctor (ECP-WarpX#4926)

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  dpgrote

  authored
  ee51424

• Code clean-up for binary collisions (ECP-WarpX#4921)

  Show description for c70a6c5
  roelof-groenewald

  authored
  c70a6c5

• Release 24.05 (ECP-WarpX#4928)

  Show description for 0a1284c
  ax3l

  authored
  0a1284c

Commits on May 14, 2024

• LICENSE.txt: Wrap to 80 Characters (ECP-WarpX#4929)

  Show description for b8c8d39
  ax3l

  authored
  b8c8d39

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4931)

  Show description for 42c3e28
  ax3l

  authored
  42c3e28

Commits on May 15, 2024

• Updated proton-boron cross section (ECP-WarpX#4377)

  Show description for ff2516f
  

  3 peopleauthored
  ff2516f

Commits on May 16, 2024

• Avoid un-needed copy in BackTransformParticleFunctor (ECP-WarpX#4934)

  atmyers

  authored
  c55230b

Commits on May 18, 2024

• fix race conditions (ECP-WarpX#4932)

  lucafedeli88

  authored
  6d2c5ed

Commits on May 20, 2024

• Ensure compilation with double precision particles for DSMC collisions (ECP-WarpX#4938)

  Show description for 30a8c3e
  

  3 peopleauthored
  30a8c3e

Commits on May 21, 2024

• AMReX/pyAMReX/PICSAR: Weekly Update (ECP-WarpX#4940)

  Show description for 559842b
  ax3l

  authored
  559842b

• Promote DSMC calculations to double precision to allow use with single-precision particles (ECP-WarpX#4941)

  Show description for 6c4171a
  archermarx

  authored
  6c4171a

Commits on May 22, 2024

• Merge remote-tracking branch 'upstream/development' into HSdevmerge_240522

  hklion

  committed
  5956ac9