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HarrisSheet development merge 240124 #138

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merged 111 commits into from
Jan 25, 2024
Merged

HarrisSheet development merge 240124 #138

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4bca649
Lassen RHEL8 (#4278)
ax3l Sep 8, 2023
14db70a
Lassen (LLNL): Numpy==1.22
ax3l Sep 8, 2023
0a1e6a0
Lassen (LLNL): New SW Directory
ax3l Sep 8, 2023
2eb664a
Quartz (LLNL): New Modules, Clang (#4281)
ax3l Sep 8, 2023
b973b3e
Lassen (LLNL): Matplotlib fix
ax3l Sep 8, 2023
68e7707
Lassen (LLNL): yt fix
ax3l Sep 9, 2023
36b2f9e
Lassen (LLNL): pyTorch w/ GNU
ax3l Sep 9, 2023
5df916b
Lassen (LLNL): GNU 11.2.1 (#4283)
ax3l Sep 11, 2023
5c00f09
Doc: Lassen (LLNL) Cleanup
ax3l Sep 11, 2023
2e4d6fd
Quartz (LLNL): PICMI Support (#4284)
ax3l Sep 11, 2023
ac52a76
add collider-relevant reduced diags (#4024)
aeriforme Sep 11, 2023
7b4cb73
PICMI: Add `warpx_intervals` option to BTD (#4288)
dpgrote Sep 12, 2023
12a695d
AMReX/PICSAR: Weekly Update (#4293)
ax3l Sep 12, 2023
51f908b
Doc: cupy on Perlmutter (NERSC) (#4289)
ax3l Sep 12, 2023
15dacea
Revert PR4266 - lower and uppers bounds (#4294)
n01r Sep 13, 2023
5f40a2b
Add flag to set GPU-aware MPI from PICMI (#4298)
RemiLehe Sep 13, 2023
6c4436e
Clang tidy CI test: add misc-definitions-in-headers check (#4253)
lucafedeli88 Sep 13, 2023
ec82914
Conda: `make` (#4292)
ax3l Sep 15, 2023
366dfe5
Doc: Conda CUDA Development (#4290)
ax3l Sep 15, 2023
a0a3db1
AMReX: Weekly Update (#4309)
ax3l Sep 18, 2023
23a896d
Prevent NaNs in Coulomb collision module (#4304)
RemiLehe Sep 20, 2023
40e9c17
Fix check of PML + Silver-Mueller compatibility (#4297)
lucafedeli88 Sep 21, 2023
ef3fa05
Lassen (LLNL): Sources & Builds Off-Home (#4311)
ax3l Sep 21, 2023
9956295
Implement Galilean PML (#733)
RemiLehe Sep 22, 2023
db87b86
Clang tidy CI test: add almost all misc-* checks (#4268)
lucafedeli88 Sep 22, 2023
a471915
Use cupy when available with the particle container wrapper (#4203)
dpgrote Sep 23, 2023
8dcd35c
fix distribution map initialization for particle buffers in BTD (#4318)
RevathiJambunathan Sep 25, 2023
9b5d933
Doc: Perlmutter (NERSC) E4S 23.05 Boost & CCache (#4302)
ax3l Sep 25, 2023
751b6d5
Add `get_charge_density` to python `WarpXParticleContainer` (#4300)
roelof-groenewald Sep 25, 2023
02dbfb5
AMReX: Weekly Update (#4322)
ax3l Sep 25, 2023
a5c1170
Particle fields diagnostic support for PICMI (#4262)
aveksler1 Sep 25, 2023
8330e27
Add particle sorting parameters to pywarpx (#4323)
n01r Sep 26, 2023
f52205b
Glossary: CEX, SEE (#4325)
ax3l Sep 27, 2023
9bf35a1
Add fluids in WarpX (#3991)
johnson452 Sep 29, 2023
bd90d1e
RZ m=0 mode support for particle field diagnostics (#4291)
aveksler1 Sep 29, 2023
99159df
Fix clang-tidy error [readability-simplify-boolean-expr] (#4328)
EZoni Sep 29, 2023
4cc78e6
Clean-up docs for PR3991, fluids (#4330)
johnson452 Sep 30, 2023
e137df4
Bump up HDF5 version on PM to 1.12.2.7 (#4333)
n01r Oct 2, 2023
c894651
Merge nodal synchronization with `FillBoundary` calls in PML (#3534)
EZoni Oct 4, 2023
7d4a507
Add SymPy notebook to derive PSATD equations in PML (#4316)
EZoni Oct 4, 2023
9dc9d2a
CI: Unbreak macOS (libomp) (#4341)
ax3l Oct 4, 2023
01f90d8
Close #4331 segfault when activating nuclearfusion collisions (#4338)
RemiLehe Oct 4, 2023
1ad0dbc
Momentum-conserving gather for MR ratio higher than 2 (#1650)
EZoni Oct 5, 2023
cb094d1
Badge: Minor RTD Link Cleanup
ax3l Oct 5, 2023
7905cb9
ensure that mass is specified (#4337)
lucafedeli88 Oct 5, 2023
12414e4
Release 23.10 (#4344)
ax3l Oct 5, 2023
3a06794
Add new PRL paper using WarpX (#4351)
RemiLehe Oct 9, 2023
57a7a01
[pre-commit.ci] pre-commit autoupdate (#4352)
pre-commit-ci[bot] Oct 10, 2023
4556911
Lassen (LLNL): TOSS3 Setup (#4346)
ax3l Oct 10, 2023
b71b89c
Fix issues with cupy-WarpX interoperability (#4348)
RemiLehe Oct 10, 2023
419d47a
Change default behavior of picmi.FieldDiagnostic and picmi.ParticleDi…
oshapoval Oct 11, 2023
807f0da
Added extended writeup to the docs for PR3991, fluids (#4365)
johnson452 Oct 12, 2023
d07e8bb
Electrostatic Diagnostics for `j`: Default to Direct Deposition (#4362)
ax3l Oct 13, 2023
a121b2a
Python: Clean Out Old Bindings (#4233)
ax3l Oct 14, 2023
df9fbaa
Restore `get_particle_boundary_buffer_structs` functionality from bef…
roelof-groenewald Oct 16, 2023
363d00e
Fix bug in clang-tidy configuration file (#4321)
lucafedeli88 Oct 16, 2023
38f9501
Fix: CMake `Python_EXECUTABLE` (#4379)
ax3l Oct 16, 2023
8ca2b93
Reorder WarpX.H so that public, protected, and private only appear on…
lucafedeli88 Oct 17, 2023
b600807
CMake: `pip_install_nodeps` Target (#4361)
ax3l Oct 17, 2023
138bb3e
[pre-commit.ci] pre-commit autoupdate (#4378)
pre-commit-ci[bot] Oct 17, 2023
1b80712
Fix: Fails in Python Callbacks Abort (#4380)
ax3l Oct 17, 2023
2770d3d
AMReX/PICSAR: Weekly Update (#4363)
ax3l Oct 17, 2023
0442f3f
Add RZ support for Ohm's law solver (#4161)
roelof-groenewald Oct 18, 2023
985992b
Python: Rename Callback Files (#4381)
ax3l Oct 18, 2023
8459109
add instructions for leonardo hpc (#4353)
MartaGalbi Oct 19, 2023
c5628f8
GetAndSetPosition: General Particle PIdx (#4386)
ax3l Oct 21, 2023
d2afb3e
AMReX: Weekly Update (#4387)
ax3l Oct 23, 2023
52561f9
Lassen (LLNL): `h5py` (#4388)
ax3l Oct 25, 2023
ba217db
Machines: HDF5 & ADIOS2 Tools in PATH (#4389)
ax3l Oct 25, 2023
eb9d79e
Clang tidy CI test: add some cppcoreguidelines-* checks (#4149)
lucafedeli88 Oct 26, 2023
8af2c31
Fix External AMReX Builds (#4390)
ax3l Oct 26, 2023
ed13486
CI: setup-python < 3.12
ax3l Oct 27, 2023
8e4b7e8
Doc: Python Backtrace in CXX Segfaults (#4391)
ax3l Oct 27, 2023
dae7987
AMReX/pyAMReX/PICSAR: Weekly Update (#4396)
ax3l Oct 30, 2023
996ea31
Docs: Add Particles-in-PML Paper (#4398)
ax3l Oct 30, 2023
f6cb58d
Doc: Fix IPAC23 DOI (#4399)
ax3l Oct 31, 2023
5b4dfdc
Python 3.12: Refactor out Distutils (#4392)
ax3l Nov 3, 2023
c034b66
Properly flush metadata of incomplete BTD, at the end of simulation (…
RemiLehe Nov 3, 2023
707e0bf
Remove call to WarpX::GetInstance from InitializeMacroMultiFabUsingPa…
lucafedeli88 Nov 3, 2023
19c32f5
Remove Cori from documentation (#3939)
RemiLehe Nov 3, 2023
b3ba07d
Allow negative mean velocity with NFluxPerCell (#4397)
dpgrote Nov 4, 2023
797eee6
Bug fix: the electric field calculation for ionization had a bug if e…
MaMH111 Nov 7, 2023
f8fef83
add Nicks (2023) to science highlights (#4407)
roelof-groenewald Nov 7, 2023
0b1c13b
In doGatherShapeN, for RZ use temporaries for Er and Etheta (#4409)
dpgrote Nov 8, 2023
fb723b9
Release 23.11 (#4410)
ax3l Nov 8, 2023
ce82a69
AMReX/pyAMReX/PICSAR: Weekly Update (#4417)
ax3l Nov 9, 2023
727429c
CI: Unbreak macOS (#4427)
ax3l Nov 16, 2023
01c55bf
Update AMReX to latest commit (#4423)
dpgrote Nov 17, 2023
d0b8871
Remove legacy references to EvolveEM which had been renamed Evolve (#…
dpgrote Nov 17, 2023
5f0cfb4
Parallelize scraping (#4418)
EyaDammak Nov 17, 2023
169887a
Doc: Laser Pulse Manip. for LPI (#4414)
ax3l Nov 17, 2023
dff2261
Fix unused variable with OpenPMD=OFF (#4421)
dpgrote Nov 17, 2023
d0db41a
AMReX: Weekly Update (#4431)
ax3l Nov 20, 2023
3089349
Add paper using WarpX for laser-driven fusion (#4428)
RemiLehe Nov 20, 2023
86d3ae6
[pre-commit.ci] pre-commit autoupdate (#4433)
pre-commit-ci[bot] Nov 21, 2023
0f755e1
Add python binding to `WarpXParticleContainer::sumParticleCharge` (#4…
roelof-groenewald Nov 21, 2023
6ace718
Refinement patch parser (#4299)
RevathiJambunathan Nov 22, 2023
245ab63
Make the static variable "authors" of the WarpX class a private membe…
lucafedeli88 Nov 22, 2023
b719ee0
Add gaussian_parse_momentum_function (#4400)
dpgrote Nov 22, 2023
7da4b2b
Make whitespace alignment more consistent (#4440)
eebasso Nov 23, 2023
67d6000
fix minor bug in picmi `ParticleDiagnostic` (#4442)
roelof-groenewald Nov 26, 2023
f2c0e24
Set the particle fields directly to the constant external fields (#4339)
dpgrote Nov 27, 2023
6628b41
Clang tidy CI test: add almost all modernize-* checks (#4319)
lucafedeli88 Nov 27, 2023
5cf442f
Move AnyFFT.H and FFT wrappers into ablastr (#4005)
lucafedeli88 Nov 27, 2023
0c6d009
AMReX/pyAMReX/PICSAR: Weekly Update (#4447)
ax3l Nov 27, 2023
cec0172
CI: numprocs * numthreads <= 2 (#4450)
ax3l Nov 28, 2023
c9293e5
Doc: Fix Typo `<probe>.integrate = true` (#4449)
ax3l Nov 28, 2023
f1eb2b2
Maxlevel user option for external field initialization (#4326)
RevathiJambunathan Nov 28, 2023
b141e65
CPU CI: Always Serialize (#4451)
ax3l Nov 28, 2023
22e05bb
Contributing style and conventions additions (#4452)
eebasso Nov 28, 2023
476cd2c
Merge branch 'development' into HSdevmerge_240124
hklion Jan 24, 2024
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3 changes: 1 addition & 2 deletions Source/Particles/Filter/FilterFunctors.H
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Original file line number Diff line number Diff line change
Expand Up @@ -99,8 +99,7 @@ struct ParserFilter
m_is_active{a_is_active},
m_function_partparser{a_filter_parser},
m_mass{a_mass},
m_t{time},
m_units{InputUnits::WarpX}
m_t{time}
{
m_ius = a_rt_param_map["upstream"] - PIdx::nattribs;
m_itr = a_rt_param_map["track"] - PIdx::nattribs;
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