Changed the base image to laxzal/laxzal:latest so this reduces the co…

…de required for maintaining

Dockerfile

@@ -1,38 +1,12 @@
 # Using the a base image of rmgpy:latest from DockerHub - Not the official version but a custom version that is smaller in size
-FROM --platform=linux/amd64 laxzal/rmgpy:latest
+FROM --platform=linux/amd64 laxzal/arc:latest
 
 USER rmguser
 
 # Installing ARC
 # Change directory to Code
 WORKDIR /home/rmguser/Code
 
-# Clone main branch ARC repository from GitHub and set as working directory
-RUN git clone -b main https://github.com/ReactionMechanismGenerator/ARC.git
-WORKDIR /home/rmguser/Code/ARC
-
-# Set environment variables for the Docker run and container
-ENV PYTHONPATH="${PYTHONPATH}:/home/rmguser/Code/ARC"
-ENV PYTHONPATH="${PYTHONPATH}:/home/rmguser/Code/AutoTST"
-ENV PYTHONPATH="${PYTHONPATH}:/home/rmguser/Code/TS-GCN"
-ENV PATH /home/rmguser/Code/ARC:$PATH
-
-# Install ARC Environment
-RUN micromamba create -y -f environment.yml && \
-    micromamba clean --all -f -y && \
-    rm -rf /home/rmguser/.cache/yarn \
-    rm -rf /home/rmguser/.cache/pip &&\
-    rm -rf /home/rmguser/.cache/pip && \
-    find -name '*.a' -delete && \
-    find -name '*.pyc' -delete && \
-    find -name '__pycache__' -type d -exec rm -rf '{}' '+' && \
-    find /opt/conda/envs/arc_env/lib/python3.7/site-packages/scipy -name 'tests' -type d -exec rm -rf '{}' '+' && \
-    find /opt/conda/envs/arc_env/lib/python3.7/site-packages/numpy -name 'tests' -type d -exec rm -rf '{}' '+' && \
-    find /opt/conda/envs/arc_env/lib/python3.7/site-packages/pandas -name 'tests' -type d -exec rm -rf '{}' '+' && \
-    find /opt/conda/envs/arc_env/lib/python3.7/site-packages -name '*.pyx' -delete && \
-    rm -rf /opt/conda/envs/arc_env/lib/python3.7/site-packages/uvloop/loop.c &&\
-    make clean
-
 # Install T3
 
 # Change directory to Code
@@ -54,21 +28,20 @@ RUN micromamba create -y -f environment.yml && \
     find /opt/conda/envs/t3_env/lib/python3.7/site-packages -name '*.pyx' -delete \
     && find /opt/conda/ -follow -type f -name '*.a' -delete \
     && find /opt/conda/ -follow -type f -name '*.pyc' -delete \
-    && find /opt/conda/ -follow -type f -name '*.js.map' -delete 
+    && find /opt/conda/ -follow -type f -name '*.js.map' -delete
 
 # Add alias to bashrc - rmge to activate the environment
 # These commands are not necessary for the Docker image to run, but they are useful for the user
-RUN echo "alias arce='micromamba activate arc_env'" >> ~/.bashrc \
-    && echo "export PYTHONPATH=/home/rmguser/Code/ARC:$PYTHONPATH" >> ~/.bashrc \
-    && echo "export PYTHONPATH=\"${PYTHONPATH}:/home/rmguser/Code/AutoTST\"" >> ~/.bashrc \
-    && echo "alias arc='python /home/rmguser/Code/ARC/ARC.py input.yml'" >> ~/.bashrc \
-    && echo "export PYTHONPATH=\"${PYTHONPATH}:/home/rmguser/Code/TS-GCN\"" >> ~/.bashrc \
-    && echo "alias deact='micromamba deactivate'" >> ~/.bashrc \
-    && echo "export arc_path='/home/rmguser/Code/ARC/'" >> ~/.bashrc \
+RUN echo "export arc_path='/home/rmguser/Code/ARC/'" >> ~/.bashrc \
     && echo "export t3_path='/home/rmguser/Code/T3/'" >> ~/.bashrc \
-    && echo "alias arccode='cd \$arc_path'" >> ~/.bashrc \
     && echo "alias t3code='cd \$t3_path'" >> ~/.bashrc \
     && echo "alias t3e='micromamba activate t3_env'" >> ~/.bashrc \
-    && echo "alias t3='python /home/rmguser/Code/T3/T3.py input.yml'" >> ~/.bashrc 
+    && echo "alias t3='python /home/rmguser/Code/T3/T3.py input.yml'" >> ~/.bashrc
+
+# Set the wrapper script as the entrypoint
+ENTRYPOINT ["/home/rmguser/entrywrapper.sh"]
 
-SHELL ["/bin/bash", "-c"]
+# Activate the T3 environment
+WORKDIR /home/rmguser/
+ARG MAMBA_DOCKERFILE_ACTIVATE=1
+ENV ENV_NAME=t3_env