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update group additivity comments with updated manuscript
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jonwzheng authored and JacksonBurns committed Apr 3, 2024
1 parent 86596b5 commit 479f585
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Showing 7 changed files with 24 additions and 15 deletions.
5 changes: 3 additions & 2 deletions input/solvation/groups/group.py
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name = "group"
shortDesc = u""
longDesc = u"""
All groups are fitted by Yunsie Chung and Pierre Walker using experimental solute parameter data (manuscript in preparation)
unless written otherwise.
All groups are fitted using experimental solute parameter data unless written otherwise.
See Chung, Y., Vermeire, F. H., Wu, H., Walker, P. J., Abraham, M. H.,
& Green, W. H. (2022). J. Chem. Inf. Model, 62(3), 433-446.
"""

entry(
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5 changes: 3 additions & 2 deletions input/solvation/groups/halogen.py
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name = "halogen"
shortDesc = u""
longDesc = u"""
All groups are fitted by Yunsie Chung and Pierre Walker using experimental solute parameter data (manuscript in preparation)
unless written otherwise.
All groups are fitted using experimental solute parameter data unless written otherwise.
See Chung, Y., Vermeire, F. H., Wu, H., Walker, P. J., Abraham, M. H.,
& Green, W. H. (2022). J. Chem. Inf. Model, 62(3), 433-446.
"""

entry(
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5 changes: 3 additions & 2 deletions input/solvation/groups/longDistanceInteraction_cyclic.py
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name = "longDistanceInteraction_cyclic"
shortDesc = u""
longDesc = u"""
All groups are fitted by Yunsie Chung and Pierre Walker using experimental solute parameter data (manuscript in preparation)
unless written otherwise.
All groups are fitted using experimental solute parameter data unless written otherwise.
See Chung, Y., Vermeire, F. H., Wu, H., Walker, P. J., Abraham, M. H.,
& Green, W. H. (2022). J. Chem. Inf. Model, 62(3), 433-446.
"""

entry(
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5 changes: 3 additions & 2 deletions input/solvation/groups/longDistanceInteraction_noncyclic.py
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name = "longDistanceInteraction_noncyclic"
shortDesc = u""
longDesc = u"""
All groups are fitted by Yunsie Chung and Pierre Walker using experimental solute parameter data (manuscript in preparation)
unless written otherwise.
All groups are fitted using experimental solute parameter data unless written otherwise.
See Chung, Y., Vermeire, F. H., Wu, H., Walker, P. J., Abraham, M. H.,
& Green, W. H. (2022). J. Chem. Inf. Model, 62(3), 433-446.
"""

entry(
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5 changes: 3 additions & 2 deletions input/solvation/groups/polycyclic.py
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name = "polycyclic"
shortDesc = u""
longDesc = u"""
All groups are fitted by Yunsie Chung and Pierre Walker using experimental solute parameter data (manuscript in preparation)
unless written otherwise.
All groups are fitted using experimental solute parameter data unless written otherwise.
See Chung, Y., Vermeire, F. H., Wu, H., Walker, P. J., Abraham, M. H.,
& Green, W. H. (2022). J. Chem. Inf. Model, 62(3), 433-446.
"""

entry(
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5 changes: 3 additions & 2 deletions input/solvation/groups/ring.py
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name = "ring"
shortDesc = u""
longDesc = u"""
All groups are fitted by Yunsie Chung and Pierre Walker using experimental solute parameter data (manuscript in preparation)
unless written otherwise.
All groups are fitted using experimental solute parameter data unless written otherwise.
See Chung, Y., Vermeire, F. H., Wu, H., Walker, P. J., Abraham, M. H.,
& Green, W. H. (2022). J. Chem. Inf. Model, 62(3), 433-446.
"""

entry(
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9 changes: 6 additions & 3 deletions input/solvation/libraries/solvent.py
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shortDesc = u""
longDesc = u"""
Most of the Abraham (s_g, b_g, e_g, l_g, a_g, c_g) and Mintz solvent parameters (s_h, b_h, e_h, l_h, a_h, c_h)
are fitted by Yunsie Chung and Pierre Walker using experimental solute parameter, solvation free energy,
and solvation enthalpy data (manuscript in preparation). Abraham solvent parameters are used for solvation
free energy (dGsolv) calculations, and Mintz solvent parameters are used for solvation enthalpy (dHsolv) calculations.
are fitted using experimental solute parameter, solvation free energy, and solvation enthalpy data.Abraham solvent parameters
are used for solvation free energy (dGsolv) calculations, and Mintz solvent parameters are used for solvation enthalpy (dHsolv) calculations.
The fitting is described in:
Chung, Y., Vermeire, F. H., Wu, H., Walker, P. J., Abraham, M. H.,
& Green, W. H. (2022). J. Chem. Inf. Model, 62(3), 433-446.
The majority of the viscosity parameters (A, B, C, D, E) are obtained from:
Viswanath, D. S., Ghosh, T. K., Prasad, D. H. L., Dutt, N. V. K., Rani, K. Y. (2007) Viscosity of Liquids.
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