Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Change CI to use Miniforge3 instead of Mambaforge #2718

Merged
merged 2 commits into from
Oct 2, 2024

Conversation

ssun30
Copy link
Contributor

@ssun30 ssun30 commented Oct 1, 2024

Motivation or Problem

Mambaforge will be sunsetted starting from Oct 1, 2024 and only Miniforge will be maintained going forward. This will cause our CI to fail at the environment creation step.

Description of Changes

The miniforge-variant parameter is changed to Miniforge3.

@ssun30 ssun30 requested review from JacksonBurns and rwest October 1, 2024 19:02
rwest
rwest previously approved these changes Oct 1, 2024
Copy link
Member

@rwest rwest left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looking at the diff and the conda-incubator/setup-miniconda readme, I approve. But suggest waiting until the CI passes.

@ssun30
Copy link
Contributor Author

ssun30 commented Oct 1, 2024

Looking at the diff and the conda-incubator/setup-miniconda readme, I approve. But suggest waiting until the CI passes.

I need to add the change logs to the workflow file and also change the miniforge version in doc build (that has failed). Will have another go in an hour or two.

Copy link

codecov bot commented Oct 1, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 54.78%. Comparing base (a2e1e60) to head (739ad26).

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #2718      +/-   ##
==========================================
- Coverage   54.78%   54.78%   -0.01%     
==========================================
  Files         125      125              
  Lines       37194    37194              
==========================================
- Hits        20378    20376       -2     
- Misses      16816    16818       +2     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@ssun30
Copy link
Contributor Author

ssun30 commented Oct 1, 2024

The CI failed at the step where it's trying to retrieve stable regression results:

Run actions/download-artifact@v4
  with:
    run-id: 11121550302
    repository: ReactionMechanismGenerator/RMG-Py
    github-token: ***
    name: stable_regression_results
    path: stable_regression_results
    merge-multiple: false
  env:
    RMG_DATABASE_BRANCH: main
    REFERENCE_JOB: false
    INPUT_RUN_POST: true
    CONDA: /home/runner/miniconda3
    CONDA_PKGS_DIR: /home/runner/conda_pkgs_dir
    PYTHONPATH: /home/runner/work/RMG-Py/RMG-Py/RMG-Py:
    CI_RUN_ID: 11121550302
Downloading single artifact
Error: Unable to download artifact(s): Artifact not found for name: stable_regression_results
        Please ensure that your artifact is not expired and the artifact was uploaded using a compatible version of toolkit/upload-artifact.

@rwest @mjohnson541 @JacksonBurns
It's trying to retrieve the stable regression results from the most recent reference CI job that failed yesterday and didn't upload any regression results, so no artifact was found. It appears to me the behavior is that non-reference CI jobs are downloading the stable regression results from the most recent reference CI job instead of the latest successful reference CI job.

This might be a weakness going forward as any failure in our scheduled reference CI job (for example, a package or Github action gets deprecated) will cause all other jobs, including PRs that intend to fix that failure, to fail as well.

@rwest
Copy link
Member

rwest commented Oct 2, 2024

Looks like a good patch - if it works. Thanks Su

Copy link

github-actions bot commented Oct 2, 2024

Regression Testing Results

WARNING:root:Initial mole fractions do not sum to one; normalizing.
WARNING:root:Initial mole fractions do not sum to one; normalizing.
WARNING:root:Initial mole fractions do not sum to one; normalizing.
⚠️ One or more regression tests failed.
Please download the failed results and run the tests locally or check the log to see why.

Detailed regression test results.

Regression test aromatics:

Reference: Execution time (DD:HH:MM:SS): 00:00:01:06
Current: Execution time (DD:HH:MM:SS): 00:00:01:05
Reference: Memory used: 2777.92 MB
Current: Memory used: 2770.89 MB

aromatics Passed Core Comparison ✅

Original model has 15 species.
Test model has 15 species. ✅
Original model has 11 reactions.
Test model has 11 reactions. ✅

aromatics Passed Edge Comparison ✅

Original model has 106 species.
Test model has 106 species. ✅
Original model has 358 reactions.
Test model has 358 reactions. ✅

Observables Test Case: Aromatics Comparison

✅ All Observables varied by less than 0.500 on average between old model and new model in all conditions!

aromatics Passed Observable Testing ✅

Regression test liquid_oxidation:

Reference: Execution time (DD:HH:MM:SS): 00:00:02:12
Current: Execution time (DD:HH:MM:SS): 00:00:02:07
Reference: Memory used: 2896.58 MB
Current: Memory used: 2892.85 MB

liquid_oxidation Failed Core Comparison ❌

Original model has 37 species.
Test model has 37 species. ✅
Original model has 215 reactions.
Test model has 216 reactions. ❌
The tested model has 1 reactions that the original model does not have. ❌
rxn: CCO[O](30) <=> [OH](22) + CC=O(69) origin: intra_H_migration

Non-identical kinetics! ❌
original:
rxn: CCCC(C)O[O](20) + CCCCCO[O](104) <=> oxygen(1) + CCCC(C)[O](61) + CCCCC[O](127) origin: Peroxyl_Disproportionation
tested:
rxn: CCCC(C)O[O](20) + CCCCCO[O](103) <=> oxygen(1) + CCCC(C)[O](64) + CCCCC[O](128) origin: Peroxyl_Disproportionation

k(1bar) 300K 400K 500K 600K 800K 1000K 1500K 2000K
k(T): 7.83 7.49 7.23 7.02 6.68 6.42 5.95 5.61
k(T): 3.77 4.45 4.86 5.14 5.48 5.68 5.96 6.09

kinetics: Arrhenius(A=(3.18266e+20,'cm^3/(mol*s)'), n=-2.694, Ea=(0,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing""")
kinetics: Arrhenius(A=(3.2e+12,'cm^3/(mol*s)'), n=0, Ea=(3.756,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R""")
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R

liquid_oxidation Failed Edge Comparison ❌

Original model has 202 species.
Test model has 202 species. ✅
Original model has 1613 reactions.
Test model has 1610 reactions. ❌
The original model has 5 reactions that the tested model does not have. ❌
rxn: CCO[O](29) <=> C[CH]OO(73) origin: intra_H_migration
rxn: C[CH]CCCO(157) + CCCCCO[O](104) <=> CC=CCCO(183) + CCCCCOO(105) origin: Disproportionation
rxn: C[CH]CCCO(157) + CCCCCO[O](104) <=> C=CCCCO(184) + CCCCCOO(105) origin: Disproportionation
rxn: C[CH]CCCO(157) + C[CH]CCCO(157) <=> CC=CCCO(183) + CCCCCO(130) origin: Disproportionation
rxn: C[CH]CCCO(157) + C[CH]CCCO(157) <=> C=CCCCO(184) + CCCCCO(130) origin: Disproportionation
The tested model has 2 reactions that the original model does not have. ❌
rxn: CCO[O](30) <=> [OH](22) + CC=O(69) origin: intra_H_migration
rxn: CCCCCO[O](103) + CCCCCO[O](103) <=> oxygen(1) + CCCCC=O(120) + CCCCCO(130) origin: Peroxyl_Termination

Non-identical kinetics! ❌
original:
rxn: CCCC(C)O[O](20) + CCCCCO[O](104) <=> oxygen(1) + CCCC(C)[O](61) + CCCCC[O](127) origin: Peroxyl_Disproportionation
tested:
rxn: CCCC(C)O[O](20) + CCCCCO[O](103) <=> oxygen(1) + CCCC(C)[O](64) + CCCCC[O](128) origin: Peroxyl_Disproportionation

k(1bar) 300K 400K 500K 600K 800K 1000K 1500K 2000K
k(T): 7.83 7.49 7.23 7.02 6.68 6.42 5.95 5.61
k(T): 3.77 4.45 4.86 5.14 5.48 5.68 5.96 6.09

kinetics: Arrhenius(A=(3.18266e+20,'cm^3/(mol*s)'), n=-2.694, Ea=(0,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing""")
kinetics: Arrhenius(A=(3.2e+12,'cm^3/(mol*s)'), n=0, Ea=(3.756,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R""")
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R

Non-identical kinetics! ❌
original:
rxn: CCCCCO[O](104) + CC(CC(C)OO)O[O](103) <=> oxygen(1) + CCCCC[O](127) + CC([O])CC(C)OO(129) origin: Peroxyl_Disproportionation
tested:
rxn: CCCCCO[O](103) + CC(CC(C)OO)O[O](104) <=> oxygen(1) + CCCCC[O](128) + CC([O])CC(C)OO(127) origin: Peroxyl_Disproportionation

k(1bar) 300K 400K 500K 600K 800K 1000K 1500K 2000K
k(T): 7.79 7.46 7.21 7.00 6.67 6.41 5.94 5.60
k(T): 3.52 4.27 4.71 5.01 5.39 5.61 5.91 6.06

kinetics: Arrhenius(A=(3.18266e+20,'cm^3/(mol*s)'), n=-2.694, Ea=(0.053,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing Ea raised from 0.0 to 0.2 kJ/mol to match endothermicity of reaction.""")
kinetics: Arrhenius(A=(3.2e+12,'cm^3/(mol*s)'), n=0, Ea=(4.096,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R""")
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing
Ea raised from 0.0 to 0.2 kJ/mol to match endothermicity of reaction.
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R

Observables Test Case: liquid_oxidation Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

liquid_oxidation Passed Observable Testing ✅

Regression test nitrogen:

Reference: Execution time (DD:HH:MM:SS): 00:00:01:25
Current: Execution time (DD:HH:MM:SS): 00:00:01:25
Reference: Memory used: 2892.21 MB
Current: Memory used: 2899.71 MB

nitrogen Passed Core Comparison ✅

Original model has 41 species.
Test model has 41 species. ✅
Original model has 360 reactions.
Test model has 360 reactions. ✅

nitrogen Passed Edge Comparison ✅

Original model has 133 species.
Test model has 133 species. ✅
Original model has 983 reactions.
Test model has 983 reactions. ✅

Observables Test Case: NC Comparison

✅ All Observables varied by less than 0.200 on average between old model and new model in all conditions!

nitrogen Passed Observable Testing ✅

Regression test oxidation:

Reference: Execution time (DD:HH:MM:SS): 00:00:02:31
Current: Execution time (DD:HH:MM:SS): 00:00:02:25
Reference: Memory used: 2759.17 MB
Current: Memory used: 2759.29 MB

oxidation Passed Core Comparison ✅

Original model has 59 species.
Test model has 59 species. ✅
Original model has 694 reactions.
Test model has 694 reactions. ✅

oxidation Passed Edge Comparison ✅

Original model has 230 species.
Test model has 230 species. ✅
Original model has 1526 reactions.
Test model has 1526 reactions. ✅

Observables Test Case: Oxidation Comparison

✅ All Observables varied by less than 0.500 on average between old model and new model in all conditions!

oxidation Passed Observable Testing ✅

Regression test sulfur:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:55
Current: Execution time (DD:HH:MM:SS): 00:00:00:58
Reference: Memory used: 2889.19 MB
Current: Memory used: 2875.38 MB

sulfur Passed Core Comparison ✅

Original model has 27 species.
Test model has 27 species. ✅
Original model has 74 reactions.
Test model has 74 reactions. ✅

sulfur Failed Edge Comparison ❌

Original model has 89 species.
Test model has 89 species. ✅
Original model has 227 reactions.
Test model has 227 reactions. ✅
The original model has 1 reactions that the tested model does not have. ❌
rxn: O(4) + SO2(15) (+N2) <=> SO3(16) (+N2) origin: primarySulfurLibrary
The tested model has 1 reactions that the original model does not have. ❌
rxn: O(4) + SO2(15) (+N2) <=> SO3(16) (+N2) origin: primarySulfurLibrary

Observables Test Case: SO2 Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

sulfur Passed Observable Testing ✅

Regression test superminimal:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:36
Current: Execution time (DD:HH:MM:SS): 00:00:00:36
Reference: Memory used: 2981.04 MB
Current: Memory used: 2968.07 MB

superminimal Passed Core Comparison ✅

Original model has 13 species.
Test model has 13 species. ✅
Original model has 21 reactions.
Test model has 21 reactions. ✅

superminimal Passed Edge Comparison ✅

Original model has 18 species.
Test model has 18 species. ✅
Original model has 28 reactions.
Test model has 28 reactions. ✅

Regression test RMS_constantVIdealGasReactor_superminimal:

Reference: Execution time (DD:HH:MM:SS): 00:00:02:24
Current: Execution time (DD:HH:MM:SS): 00:00:02:28
Reference: Memory used: 3444.63 MB
Current: Memory used: 3439.17 MB

RMS_constantVIdealGasReactor_superminimal Passed Core Comparison ✅

Original model has 13 species.
Test model has 13 species. ✅
Original model has 19 reactions.
Test model has 19 reactions. ✅

RMS_constantVIdealGasReactor_superminimal Passed Edge Comparison ✅

Original model has 13 species.
Test model has 13 species. ✅
Original model has 19 reactions.
Test model has 19 reactions. ✅

Observables Test Case: RMS_constantVIdealGasReactor_superminimal Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

RMS_constantVIdealGasReactor_superminimal Passed Observable Testing ✅

Regression test RMS_CSTR_liquid_oxidation:

Reference: Execution time (DD:HH:MM:SS): 00:00:06:03
Current: Execution time (DD:HH:MM:SS): 00:00:06:09
Reference: Memory used: 3368.15 MB
Current: Memory used: 3357.60 MB

RMS_CSTR_liquid_oxidation Failed Core Comparison ❌

Original model has 37 species.
Test model has 35 species. ❌
Original model has 233 reactions.
Test model has 211 reactions. ❌
The original model has 2 species that the tested model does not have. ❌
spc: CCC(38)
spc: C[CH]OCCC(128)
The original model has 22 reactions that the tested model does not have. ❌
rxn: CCO[O](35) <=> [OH](21) + CC=O(62) origin: intra_H_migration
rxn: CC=O(62) + [CH2]CC(5) <=> C[CH]OCCC(128) origin: R_Addition_MultipleBond
rxn: [CH2]CC(5) + pentane(2) <=> CCC(38) + CC[CH]CC(7) origin: H_Abstraction
rxn: [CH2]CC(5) + pentane(2) <=> CCC(38) + C[CH]CCC(11) origin: H_Abstraction
rxn: CCC(38) + [CH2]CCCC(12) <=> [CH2]CC(5) + pentane(2) origin: H_Abstraction
rxn: [CH2]CC(5) + CCCC(C)OO(59) <=> CCC(38) + CCCC(C)O[O](33) origin: H_Abstraction
rxn: [CH2]CC(5) + CCCC(C)OO(59) <=> CCC(38) + C[CH]CC(C)OO(48) origin: H_Abstraction
rxn: [CH2]CC(5) + C[CH]CCC(11) <=> CCC(38) + C=CCCC(25) origin: Disproportionation
rxn: [CH2]CC(5) + CCC(CC)OO(23) <=> CCC(38) + CCC(CC)O[O](19) origin: H_Abstraction
rxn: [CH2]CC(5) + CCCCCOO(91) <=> CCC(38) + CCCCCO[O](72) origin: H_Abstraction
rxn: [CH2]CC(5) + CCCOO(60) <=> CCCO[O](36) + CCC(38) origin: H_Abstraction
rxn: OO(20) + [CH2]CC(5) <=> [O]O(13) + CCC(38) origin: H_Abstraction
rxn: [OH](21) + CCC(38) <=> O(40) + [CH2]CC(5) origin: H_Abstraction
rxn: [O]O(13) + [CH2]CC(5) <=> oxygen(1) + CCC(38) origin: H_Abstraction
rxn: [CH2]CC(5) + [CH2]CCCC(12) <=> CCC(38) + C=CCCC(25) origin: Disproportionation
rxn: [CH2]CC(5) + CCCC(C)OO(59) <=> CCC(38) + CC[CH]C(C)OO(46) origin: H_Abstraction
rxn: [CH2]CC(5) + CCC(CC)OO(23) <=> CCC(38) + C[CH]C(CC)OO(29) origin: H_Abstraction
rxn: [CH2]CC(5) + CC(CC(C)OO)OO(171) <=> CCC(38) + CC(CC(C)OO)O[O](148) origin: H_Abstraction
rxn: [CH2]CC(5) + C[CH]CCC(11) <=> CCC(38) + CC=CCC(16) origin: Disproportionation
rxn: [CH2]CC(5) + CC[CH]CC(7) <=> CCC(38) + CC=CCC(16) origin: Disproportionation
rxn: CCO[O](35) + C[CH]CCC(11) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation
rxn: CCO[O](35) + CC[CH]CC(7) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation

RMS_CSTR_liquid_oxidation Failed Edge Comparison ❌

Original model has 206 species.
Test model has 197 species. ❌
Original model has 1508 reactions.
Test model has 1421 reactions. ❌
The original model has 9 species that the tested model does not have. ❌
spc: C[CH]OCC(142)
spc: C=COCCC(143)
spc: [CH2]COCCC(144)
spc: CC[CH]OCC(145)
spc: C[CH]COCC(146)
spc: [CH2]CCOCC(147)
spc: CCCOCC(149)
spc: CC([O])O(150)
spc: C[CH]C(O)CC(202)
The original model has 99 reactions that the tested model does not have. ❌
rxn: CCO[O](35) <=> [OH](21) + CC=O(62) origin: intra_H_migration
rxn: [CH2]CC(5) + [CH2]CCCC(12) <=> CCC(38) + C=CCCC(25) origin: Disproportionation
rxn: CCO[O](35) + C[CH]CCC(11) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation
rxn: CCO[O](35) + CC[CH]CC(7) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation
rxn: CCCO[O](36) <=> [OH](21) + CCC=O(50) origin: intra_H_migration
rxn: [CH2](3) + C[CH]OCC(142) <=> C[CH]OCCC(128) origin: 1,2_Insertion_carbene
rxn: [CH2](3) + C[CH]OCC(142) <=> C[CH]OCCC(128) origin: 1,2_Insertion_carbene
rxn: [H](8) + C=COCCC(143) <=> C[CH]OCCC(128) origin: R_Addition_MultipleBond
rxn: [CH2]COCCC(144) <=> C[CH]OCCC(128) origin: intra_H_migration
rxn: CC[CH]OCC(145) <=> C[CH]OCCC(128) origin: intra_H_migration
rxn: C[CH]COCC(146) <=> C[CH]OCCC(128) origin: intra_H_migration
rxn: [CH2]CCOCC(147) <=> C[CH]OCCC(128) origin: intra_H_migration
rxn: [CH2](3) + CC(37) <=> CCC(38) origin: 1,2_Insertion_carbene
rxn: [CH2](3) + CC(37) <=> CCC(38) origin: 1,2_Insertion_carbene
rxn: [CH3](10) + C[CH2](6) <=> CCC(38) origin: R_Recombination
rxn: [H](8) + C[CH]C(32) <=> CCC(38) origin: R_Recombination
rxn: [H](8) + [CH2]CC(5) <=> CCC(38) origin: R_Recombination
rxn: oxygen(1) + CCC(38) <=> [O]O(13) + C[CH]C(32) origin: H_Abstraction
rxn: CC[CH]CC(7) + CCCOCC(149) <=> C[CH]OCCC(128) + pentane(2) origin: H_Abstraction
rxn: C[CH]CCC(11) + CCCOCC(149) <=> C[CH]OCCC(128) + pentane(2) origin: H_Abstraction
rxn: [CH2]CCCC(12) + CCCOCC(149) <=> C[CH]OCCC(128) + pentane(2) origin: H_Abstraction
rxn: [O]O(13) + CCC(38) <=> OO(20) + C[CH]C(32) origin: H_Abstraction
rxn: C[CH]C(32) + pentane(2) <=> CCC(38) + C[CH]CCC(11) origin: H_Abstraction
rxn: C[CH]C(32) + pentane(2) <=> CCC(38) + CC[CH]CC(7) origin: H_Abstraction
rxn: C[CH]C(32) + CCC(CC)OO(23) <=> CCC(38) + CCC(CC)O[O](19) origin: H_Abstraction
rxn: [CH2]CC(5) + CCC(38) <=> C[CH]C(32) + CCC(38) origin: H_Abstraction
rxn: C[CH]C(32) + CCCC(C)OO(59) <=> CCC(38) + CCCC(C)O[O](33) origin: H_Abstraction
rxn: C[CH]C(32) + CCCOO(60) <=> CCCO[O](36) + CCC(38) origin: H_Abstraction
rxn: CCC(38) + [CH2]CCCC(12) <=> C[CH]C(32) + pentane(2) origin: H_Abstraction
rxn: [OH](21) + CC=O(62) <=> O(40) + C=C[O](121) origin: H_Abstraction
rxn: [OH](21) + CC=O(62) <=> O(40) + C[C]=O(122) origin: H_Abstraction
rxn: [OH](21) + CC=O(62) <=> C[CH]OO(66) origin: R_Addition_MultipleBond
rxn: [OH](21) + CC=O(62) <=> CC([O])O(150) origin: R_Addition_MultipleBond
rxn: [OH](21) + CCC(38) <=> O(40) + C[CH]C(32) origin: H_Abstraction
rxn: C[CH]C(32) + CCCCCOO(91) <=> CCC(38) + CCCCCO[O](72) origin: H_Abstraction
rxn: C[CH]C(32) + [CH2]CCCC(12) <=> CCC(38) + C=CCCC(25) origin: Disproportionation
rxn: C[CH]C(32) + C[CH]CCC(11) <=> CCC(38) + C=CCCC(25) origin: Disproportionation
rxn: C[CH]O(123) + CCO[O](35) <=> CC=O(62) + CCOO(73) origin: Disproportionation
rxn: CC[O](93) + CCO[O](35) <=> CC=O(62) + CCOO(73) origin: Disproportionation
rxn: C[CH]O(123) + C[CH]OO(66) <=> CC=O(62) + CCOO(73) origin: Disproportionation
rxn: CC[O](93) + C[CH]OO(66) <=> CC=O(62) + CCOO(73) origin: Disproportionation
rxn: C[CH]O(123) + [CH2]COO(63) <=> CC=O(62) + CCOO(73) origin: Disproportionation
rxn: CC[O](93) + [CH2]COO(63) <=> CC=O(62) + CCOO(73) origin: Disproportionation
rxn: CC=O(62) + CCCC(C)[O](65) <=> C=C[O](121) + CCCC(C)O(108) origin: H_Abstraction
rxn: CC=O(62) + CCCC(C)[O](65) <=> C[C]=O(122) + CCCC(C)O(108) origin: H_Abstraction
rxn: C[CH]C(32) + CCCC(C)O(108) <=> CCC(38) + CCCC(C)[O](65) origin: H_Abstraction
rxn: CCC(38) + CCCC(C)[O](65) <=> [CH2]CC(5) + CCCC(C)O(108) origin: H_Abstraction
rxn: C[CH]O(123) + C[CH]C(32) <=> CC=O(62) + CCC(38) origin: Disproportionation
rxn: C[CH]O(123) + [CH2]CC(5) <=> CC=O(62) + CCC(38) origin: Disproportionation
rxn: CC[O](93) + C[CH]C(32) <=> CC=O(62) + CCC(38) origin: Disproportionation
rxn: CC[O](93) + [CH2]CC(5) <=> CC=O(62) + CCC(38) origin: Disproportionation
rxn: C[CH]C(32) + CCCC(C)OO(59) <=> CCC(38) + C[CH]CC(C)OO(48) origin: H_Abstraction
rxn: C[CH]CC(C)OO(48) + CC(CC(C)OO)O[O](148) <=> CC=CC(C)OO(139) + CC(CC(C)OO)OO(171) origin: Disproportionation
rxn: C[CH]CC(C)OO(48) + CC(CC(C)OO)O[O](148) <=> C=CCC(C)OO(140) + CC(CC(C)OO)OO(171) origin: Disproportionation
rxn: C[CH]C(32) + CC(CC(C)OO)OO(171) <=> CCC(38) + CC(CC(C)OO)O[O](148) origin: H_Abstraction
rxn: CCC(38) + CC[CH]C(C)OO(46) <=> C[CH]C(32) + CCCC(C)OO(59) origin: H_Abstraction
rxn: CCC(38) + C[CH]C(CC)OO(29) <=> C[CH]C(32) + CCC(CC)OO(23) origin: H_Abstraction
rxn: CCC(CC)OOO(115) + CC(CC(C)OO)OO(171) <=> O(40) + CCC(CC)O[O](19) + CC(CC(C)OO)O[O](148) origin: Bimolec_Hydroperoxide_Decomposition
rxn: CCCC(C)OOO(110) + CC(CC(C)OO)OO(171) <=> O(40) + CCCC(C)O[O](33) + CC(CC(C)OO)O[O](148) origin: Bimolec_Hydroperoxide_Decomposition
rxn: CCCCCOOO(116) + CC(CC(C)OO)OO(171) <=> O(40) + CCCCCO[O](72) + CC(CC(C)OO)O[O](148) origin: Bimolec_Hydroperoxide_Decomposition
rxn: CCCO[O](36) + CC(CC(C)OO)O[O](148) <=> oxygen(1) + CCC[O](98) + CC([O])CC(C)OO(172) origin: Peroxyl_Disproportionation
rxn: CCCO[O](36) + CC(CC(C)OO)O[O](148) <=> oxygen(1) + CCC=O(50) + CC(O)CC(C)OO(173) origin: Peroxyl_Termination
rxn: CCCO[O](36) + CC(CC(C)OO)O[O](148) <=> oxygen(1) + CCCO(127) + CC(=O)CC(C)OO(154) origin: Peroxyl_Termination
rxn: [OH](21) + CC(CC(C)OO)OO(171) <=> O(40) + C[C](CC(C)OO)OO(176) origin: H_Abstraction
rxn: [OH](21) + CC(CC(C)OO)OO(171) <=> O(40) + CC([CH]C(C)OO)OO(155) origin: H_Abstraction
rxn: [OH](21) + CC(CC(C)OO)OO(171) <=> O(40) + [CH2]C(CC(C)OO)OO(156) origin: H_Abstraction
rxn: [OH](21) + CC=CCC(16) <=> O(40) + C[CH]C=CC(181) origin: H_Abstraction
rxn: [OH](21) + CC=CCC(16) <=> O(40) + [CH2]CC=CC(182) origin: H_Abstraction
rxn: [OH](21) + CC=CCC(16) <=> O(40) + [CH2]C=CCC(84) origin: H_Abstraction
rxn: [OH](21) + CC=CCC(16) <=> O(40) + CC=[C]CC(184) origin: H_Abstraction
rxn: [OH](21) + CC=CCC(16) <=> O(40) + C[C]=CCC(185) origin: H_Abstraction
rxn: [OH](21) + CC=CCC(16) <=> C[CH]C(O)CC(202) origin: R_Addition_MultipleBond
rxn: [OH](21) + CC=CCC(16) <=> CC[CH]C(C)O(103) origin: R_Addition_MultipleBond
rxn: [OH](21) + CCC1OC1C(160) <=> O(40) + CC[C]1OC1C(192) origin: H_Abstraction
rxn: [OH](21) + CCC1OC1C(160) <=> O(40) + CCC1O[C]1C(194) origin: H_Abstraction
rxn: [OH](21) + CCC1OC1C(160) <=> O(40) + C[CH]C1OC1C(196) origin: H_Abstraction
rxn: [OH](21) + CCC1OC1C(160) <=> O(40) + [CH2]C1OC1CC(197) origin: H_Abstraction
rxn: [OH](21) + CCC1OC1C(160) <=> O(40) + [CH2]CC1OC1C(198) origin: H_Abstraction
rxn: C[CH]OO(66) + C[CH]CCC(11) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation
rxn: C[CH]OO(66) + CC[CH]CC(7) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation
rxn: [CH2]COO(63) + C[CH]CCC(11) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation
rxn: [CH2]COO(63) + CC[CH]CC(7) <=> CCOO(73) + CC=CCC(16) origin: Disproportionation
rxn: CCCC(C)[O](65) + CC(CC(C)OO)OO(171) <=> CC(CC(C)OO)O[O](148) + CCCC(C)O(108) origin: H_Abstraction
rxn: CCCC(C)[O](65) + CC(CC(C)OO)OO(171) <=> C[C](CC(C)OO)OO(176) + CCCC(C)O(108) origin: H_Abstraction
rxn: CCCC(C)[O](65) + CC(CC(C)OO)OO(171) <=> CC([CH]C(C)OO)OO(155) + CCCC(C)O(108) origin: H_Abstraction
rxn: CCCC(C)[O](65) + CC(CC(C)OO)OO(171) <=> [CH2]C(CC(C)OO)OO(156) + CCCC(C)O(108) origin: H_Abstraction
rxn: CC=CCC(16) + CCCC(C)[O](65) <=> C[CH]C=CC(181) + CCCC(C)O(108) origin: H_Abstraction
rxn: CC=CCC(16) + CCCC(C)[O](65) <=> [CH2]CC=CC(182) + CCCC(C)O(108) origin: H_Abstraction
rxn: CC=CCC(16) + CCCC(C)[O](65) <=> [CH2]C=CCC(84) + CCCC(C)O(108) origin: H_Abstraction
rxn: CC=[C]CC(184) + CCCC(C)O(108) <=> CC=CCC(16) + CCCC(C)[O](65) origin: H_Abstraction
rxn: C[C]=CCC(185) + CCCC(C)O(108) <=> CC=CCC(16) + CCCC(C)[O](65) origin: H_Abstraction
rxn: CCC1OC1C(160) + CCCC(C)[O](65) <=> CC[C]1OC1C(192) + CCCC(C)O(108) origin: H_Abstraction
rxn: CCC1OC1C(160) + CCCC(C)[O](65) <=> CCC1O[C]1C(194) + CCCC(C)O(108) origin: H_Abstraction
rxn: CCC1OC1C(160) + CCCC(C)[O](65) <=> C[CH]C1OC1C(196) + CCCC(C)O(108) origin: H_Abstraction
rxn: CCC1OC1C(160) + CCCC(C)[O](65) <=> [CH2]C1OC1CC(197) + CCCC(C)O(108) origin: H_Abstraction
rxn: CCC1OC1C(160) + CCCC(C)[O](65) <=> [CH2]CC1OC1C(198) + CCCC(C)O(108) origin: H_Abstraction
rxn: C[CH]C(32) + C[CH]CCC(11) <=> CCC(38) + CC=CCC(16) origin: Disproportionation
rxn: C[CH]C(32) + CC[CH]CC(7) <=> CCC(38) + CC=CCC(16) origin: Disproportionation
rxn: OOO(114) + CC(CC(C)OO)OO(171) <=> [O]O(13) + O(40) + CC(CC(C)OO)O[O](148) origin: Bimolec_Hydroperoxide_Decomposition
The tested model has 12 reactions that the original model does not have. ❌
rxn: CCCO[O](35) <=> CC[CH]OO(45) origin: intra_H_migration
rxn: CCO[O](36) <=> C[CH]OO(62) origin: intra_H_migration
rxn: CCCC(C)[O](61) + CC[CH]C(C)OO(50) <=> CCC=C(C)OO(111) + CCCC(C)O(128) origin: Disproportionation
rxn: CCCC(C)[O](61) + CC[CH]C(C)OO(50) <=> CC=CC(C)OO(112) + CCCC(C)O(128) origin: Disproportionation
rxn: CCCC(C)[O](61) + CC[CH]C(C)OO(50) <=> CCCC(C)=O(49) + CCCC(C)OO(58) origin: Disproportionation
rxn: CCCC(C)[O](61) + C[CH]CC(C)OO(52) <=> CC=CC(C)OO(112) + CCCC(C)O(128) origin: Disproportionation
rxn: CCCC(C)[O](61) + C[CH]CC(C)OO(52) <=> C=CCC(C)OO(118) + CCCC(C)O(128) origin: Disproportionation
rxn: CCCC(C)[O](61) + C[CH]CC(C)OO(52) <=> CCCC(C)=O(49) + CCCC(C)OO(58) origin: Disproportionation
rxn: CCCC(C)[O](61) + C[CH]C(CC)OO(29) <=> CC=C(CC)OO(120) + CCCC(C)O(128) origin: Disproportionation
rxn: CCCC(C)[O](61) + C[CH]C(CC)OO(29) <=> C=CC(CC)OO(121) + CCCC(C)O(128) origin: Disproportionation
rxn: CCCC(C)[O](61) + C[CH]C(CC)OO(29) <=> CCCC(C)=O(49) + CCC(CC)OO(23) origin: Disproportionation
rxn: [CH2]CC(5) + CC(CC(C)OO)O[O](126) <=> C=CC(26) + CC(CC(C)OO)OO(131) origin: Disproportionation

Observables Test Case: RMS_CSTR_liquid_oxidation Comparison

The following observables did not match:

❌ Observable species CCCCC varied by more than 0.100 on average between old model pentane(2) and new model pentane(2) in condition 1.

⚠️ The following reaction conditions had some discrepancies:
Condition 1:
Reactor Type: IdealGasReactor
Reaction Time: 1000 s
T0: 600 K
P0: 1 bar
Initial Mole Fractions: {'CCCCC': 0.9, '[O][O]': 0.1}

RMS_CSTR_liquid_oxidation Failed Observable Testing ❌

Regression test fragment:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:41
Current: Execution time (DD:HH:MM:SS): 00:00:00:43
Reference: Memory used: 2699.53 MB
Current: Memory used: 2686.42 MB

fragment Passed Core Comparison ✅

Original model has 10 species.
Test model has 10 species. ✅
Original model has 2 reactions.
Test model has 2 reactions. ✅

fragment Passed Edge Comparison ✅

Original model has 33 species.
Test model has 33 species. ✅
Original model has 47 reactions.
Test model has 47 reactions. ✅

Observables Test Case: fragment Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

fragment Passed Observable Testing ✅

Regression test RMS_constantVIdealGasReactor_fragment:

Reference: Execution time (DD:HH:MM:SS): 00:00:03:04
Current: Execution time (DD:HH:MM:SS): 00:00:03:19
Reference: Memory used: 3588.14 MB
Current: Memory used: 3582.31 MB

RMS_constantVIdealGasReactor_fragment Passed Core Comparison ✅

Original model has 10 species.
Test model has 10 species. ✅
Original model has 2 reactions.
Test model has 2 reactions. ✅

RMS_constantVIdealGasReactor_fragment Passed Edge Comparison ✅

Original model has 27 species.
Test model has 27 species. ✅
Original model has 24 reactions.
Test model has 24 reactions. ✅

Observables Test Case: RMS_constantVIdealGasReactor_fragment Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

RMS_constantVIdealGasReactor_fragment Passed Observable Testing ✅

Regression test minimal_surface:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:45
Current: Execution time (DD:HH:MM:SS): 00:00:00:47
Reference: Memory used: 2872.32 MB
Current: Memory used: 2864.82 MB

minimal_surface Passed Core Comparison ✅

Original model has 11 species.
Test model has 11 species. ✅
Original model has 3 reactions.
Test model has 3 reactions. ✅

minimal_surface Passed Edge Comparison ✅

Original model has 38 species.
Test model has 38 species. ✅
Original model has 38 reactions.
Test model has 38 reactions. ✅

Observables Test Case: minimal_surface Comparison

✅ All Observables varied by less than 0.500 on average between old model and new model in all conditions!

minimal_surface Passed Observable Testing ✅

beep boop this comment was written by a bot 🤖

ssun30 added 2 commits October 1, 2024 23:13
Added changelog to the workflow file
Non-reference CIs will now download reference
regression results from the most recent successful
reference CI run in the past 15 days
@ssun30 ssun30 force-pushed the Change_CI_to_Miniforge branch from ce3e15d to 3bb3015 Compare October 2, 2024 03:14
@ssun30
Copy link
Contributor Author

ssun30 commented Oct 2, 2024

Problem with retrieving regression results solved. Squashed a couple commits. Should be ready to deploy.

Copy link
Contributor

@JacksonBurns JacksonBurns left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good thanks for the thorough patch. Will auto-merge for when CI passes

@JacksonBurns JacksonBurns enabled auto-merge October 2, 2024 03:18
@JacksonBurns JacksonBurns merged commit d3f8605 into main Oct 2, 2024
9 checks passed
@JacksonBurns JacksonBurns deleted the Change_CI_to_Miniforge branch October 2, 2024 05:39
Copy link

github-actions bot commented Oct 2, 2024

Regression Testing Results

WARNING:root:Initial mole fractions do not sum to one; normalizing.
WARNING:root:Initial mole fractions do not sum to one; normalizing.
WARNING:root:Initial mole fractions do not sum to one; normalizing.
⚠️ One or more regression tests failed.
Please download the failed results and run the tests locally or check the log to see why.

Detailed regression test results.

Regression test aromatics:

Reference: Execution time (DD:HH:MM:SS): 00:00:01:06
Current: Execution time (DD:HH:MM:SS): 00:00:01:05
Reference: Memory used: 2777.92 MB
Current: Memory used: 2773.76 MB

aromatics Passed Core Comparison ✅

Original model has 15 species.
Test model has 15 species. ✅
Original model has 11 reactions.
Test model has 11 reactions. ✅

aromatics Passed Edge Comparison ✅

Original model has 106 species.
Test model has 106 species. ✅
Original model has 358 reactions.
Test model has 358 reactions. ✅

Observables Test Case: Aromatics Comparison

✅ All Observables varied by less than 0.500 on average between old model and new model in all conditions!

aromatics Passed Observable Testing ✅

Regression test liquid_oxidation:

Reference: Execution time (DD:HH:MM:SS): 00:00:02:12
Current: Execution time (DD:HH:MM:SS): 00:00:02:09
Reference: Memory used: 2896.58 MB
Current: Memory used: 2890.26 MB

liquid_oxidation Passed Core Comparison ✅

Original model has 37 species.
Test model has 37 species. ✅
Original model has 215 reactions.
Test model has 215 reactions. ✅

liquid_oxidation Failed Edge Comparison ❌

Original model has 202 species.
Test model has 202 species. ✅
Original model has 1613 reactions.
Test model has 1618 reactions. ❌
The tested model has 5 reactions that the original model does not have. ❌
rxn: [CH2]CCOO(79) + CCCCCOO(105) <=> CCCOO(34) + CC[CH]CCOO(114) origin: H_Abstraction
rxn: [CH2]CCOO(79) + CCCCCOO(105) <=> CCCOO(34) + CCC[CH]COO(113) origin: H_Abstraction
rxn: [CH2]CCOO(79) + CCCCCOO(105) <=> CCCOO(34) + C[CH]CCCOO(115) origin: H_Abstraction
rxn: [CH2]CCOO(79) + CCCCCOO(105) <=> CCCOO(34) + CCCC[CH]OO(135) origin: H_Abstraction
rxn: CCCOO(34) + [CH2]CCCCOO(116) <=> [CH2]CCOO(79) + CCCCCOO(105) origin: H_Abstraction

Non-identical kinetics! ❌
original:
rxn: CCCCCO[O](104) + CC(CC(C)OO)O[O](103) <=> oxygen(1) + CCCCC[O](127) + CC([O])CC(C)OO(129) origin: Peroxyl_Disproportionation
tested:
rxn: CCCCCO[O](103) + CC(CC(C)OO)O[O](104) <=> oxygen(1) + CCCCC[O](128) + CC([O])CC(C)OO(127) origin: Peroxyl_Disproportionation

k(1bar) 300K 400K 500K 600K 800K 1000K 1500K 2000K
k(T): 7.79 7.46 7.21 7.00 6.67 6.41 5.94 5.60
k(T): 3.52 4.27 4.71 5.01 5.39 5.61 5.91 6.06

kinetics: Arrhenius(A=(3.18266e+20,'cm^3/(mol*s)'), n=-2.694, Ea=(0.053,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing Ea raised from 0.0 to 0.2 kJ/mol to match endothermicity of reaction.""")
kinetics: Arrhenius(A=(3.2e+12,'cm^3/(mol*s)'), n=0, Ea=(4.096,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R""")
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing
Ea raised from 0.0 to 0.2 kJ/mol to match endothermicity of reaction.
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R

Observables Test Case: liquid_oxidation Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

liquid_oxidation Passed Observable Testing ✅

Regression test nitrogen:

Reference: Execution time (DD:HH:MM:SS): 00:00:01:25
Current: Execution time (DD:HH:MM:SS): 00:00:01:25
Reference: Memory used: 2892.21 MB
Current: Memory used: 2887.67 MB

nitrogen Passed Core Comparison ✅

Original model has 41 species.
Test model has 41 species. ✅
Original model has 360 reactions.
Test model has 360 reactions. ✅

nitrogen Passed Edge Comparison ✅

Original model has 133 species.
Test model has 133 species. ✅
Original model has 983 reactions.
Test model has 983 reactions. ✅

Observables Test Case: NC Comparison

✅ All Observables varied by less than 0.200 on average between old model and new model in all conditions!

nitrogen Passed Observable Testing ✅

Regression test oxidation:

Reference: Execution time (DD:HH:MM:SS): 00:00:02:31
Current: Execution time (DD:HH:MM:SS): 00:00:02:23
Reference: Memory used: 2759.17 MB
Current: Memory used: 2761.15 MB

oxidation Passed Core Comparison ✅

Original model has 59 species.
Test model has 59 species. ✅
Original model has 694 reactions.
Test model has 694 reactions. ✅

oxidation Passed Edge Comparison ✅

Original model has 230 species.
Test model has 230 species. ✅
Original model has 1526 reactions.
Test model has 1526 reactions. ✅

Observables Test Case: Oxidation Comparison

✅ All Observables varied by less than 0.500 on average between old model and new model in all conditions!

oxidation Passed Observable Testing ✅

Regression test sulfur:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:55
Current: Execution time (DD:HH:MM:SS): 00:00:00:53
Reference: Memory used: 2889.19 MB
Current: Memory used: 2865.32 MB

sulfur Passed Core Comparison ✅

Original model has 27 species.
Test model has 27 species. ✅
Original model has 74 reactions.
Test model has 74 reactions. ✅

sulfur Failed Edge Comparison ❌

Original model has 89 species.
Test model has 89 species. ✅
Original model has 227 reactions.
Test model has 227 reactions. ✅
The original model has 1 reactions that the tested model does not have. ❌
rxn: O(4) + SO2(15) (+N2) <=> SO3(16) (+N2) origin: primarySulfurLibrary
The tested model has 1 reactions that the original model does not have. ❌
rxn: O(4) + SO2(15) (+N2) <=> SO3(16) (+N2) origin: primarySulfurLibrary

Observables Test Case: SO2 Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

sulfur Passed Observable Testing ✅

Regression test superminimal:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:36
Current: Execution time (DD:HH:MM:SS): 00:00:00:35
Reference: Memory used: 2981.04 MB
Current: Memory used: 2975.06 MB

superminimal Passed Core Comparison ✅

Original model has 13 species.
Test model has 13 species. ✅
Original model has 21 reactions.
Test model has 21 reactions. ✅

superminimal Passed Edge Comparison ✅

Original model has 18 species.
Test model has 18 species. ✅
Original model has 28 reactions.
Test model has 28 reactions. ✅

Regression test RMS_constantVIdealGasReactor_superminimal:

Reference: Execution time (DD:HH:MM:SS): 00:00:02:24
Current: Execution time (DD:HH:MM:SS): 00:00:02:21
Reference: Memory used: 3444.63 MB
Current: Memory used: 3432.33 MB

RMS_constantVIdealGasReactor_superminimal Passed Core Comparison ✅

Original model has 13 species.
Test model has 13 species. ✅
Original model has 19 reactions.
Test model has 19 reactions. ✅

RMS_constantVIdealGasReactor_superminimal Passed Edge Comparison ✅

Original model has 13 species.
Test model has 13 species. ✅
Original model has 19 reactions.
Test model has 19 reactions. ✅

Observables Test Case: RMS_constantVIdealGasReactor_superminimal Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

RMS_constantVIdealGasReactor_superminimal Passed Observable Testing ✅

Regression test RMS_CSTR_liquid_oxidation:

Reference: Execution time (DD:HH:MM:SS): 00:00:06:03
Current: Execution time (DD:HH:MM:SS): 00:00:05:51
Reference: Memory used: 3368.15 MB
Current: Memory used: 3358.55 MB

RMS_CSTR_liquid_oxidation Passed Core Comparison ✅

Original model has 37 species.
Test model has 37 species. ✅
Original model has 233 reactions.
Test model has 233 reactions. ✅

RMS_CSTR_liquid_oxidation Failed Edge Comparison ❌

Original model has 206 species.
Test model has 206 species. ✅
Original model has 1508 reactions.
Test model has 1508 reactions. ✅

Non-identical kinetics! ❌
original:
rxn: CCCO[O](36) + CCCC(C)O[O](33) <=> oxygen(1) + CCC[O](98) + CCCC(C)[O](65) origin: Peroxyl_Disproportionation
tested:
rxn: CCCO[O](36) + CCCC(C)O[O](33) <=> oxygen(1) + CCC[O](98) + CCCC(C)[O](65) origin: Peroxyl_Disproportionation

k(1bar) 300K 400K 500K 600K 800K 1000K 1500K 2000K
k(T): 3.69 4.39 4.82 5.10 5.45 5.66 5.94 6.08
k(T): 7.83 7.49 7.23 7.02 6.68 6.42 5.95 5.61

kinetics: Arrhenius(A=(3.2e+12,'cm^3/(mol*s)'), n=0, Ea=(3.866,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R""")
kinetics: Arrhenius(A=(3.18266e+20,'cm^3/(mol*s)'), n=-2.694, Ea=(0,'kcal/mol'), T0=(1,'K'), comment="""Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing""")
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing_Ext-5R-R
kinetics: Estimated from node Root_Ext-5R-R_7R!H->C_N-7C-inRing

Observables Test Case: RMS_CSTR_liquid_oxidation Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

RMS_CSTR_liquid_oxidation Passed Observable Testing ✅

Regression test fragment:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:41
Current: Execution time (DD:HH:MM:SS): 00:00:00:40
Reference: Memory used: 2699.53 MB
Current: Memory used: 2689.11 MB

fragment Passed Core Comparison ✅

Original model has 10 species.
Test model has 10 species. ✅
Original model has 2 reactions.
Test model has 2 reactions. ✅

fragment Passed Edge Comparison ✅

Original model has 33 species.
Test model has 33 species. ✅
Original model has 47 reactions.
Test model has 47 reactions. ✅

Observables Test Case: fragment Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

fragment Passed Observable Testing ✅

Regression test RMS_constantVIdealGasReactor_fragment:

Reference: Execution time (DD:HH:MM:SS): 00:00:03:04
Current: Execution time (DD:HH:MM:SS): 00:00:03:00
Reference: Memory used: 3588.14 MB
Current: Memory used: 3582.18 MB

RMS_constantVIdealGasReactor_fragment Passed Core Comparison ✅

Original model has 10 species.
Test model has 10 species. ✅
Original model has 2 reactions.
Test model has 2 reactions. ✅

RMS_constantVIdealGasReactor_fragment Passed Edge Comparison ✅

Original model has 27 species.
Test model has 27 species. ✅
Original model has 24 reactions.
Test model has 24 reactions. ✅

Observables Test Case: RMS_constantVIdealGasReactor_fragment Comparison

✅ All Observables varied by less than 0.100 on average between old model and new model in all conditions!

RMS_constantVIdealGasReactor_fragment Passed Observable Testing ✅

Regression test minimal_surface:

Reference: Execution time (DD:HH:MM:SS): 00:00:00:45
Current: Execution time (DD:HH:MM:SS): 00:00:00:43
Reference: Memory used: 2872.32 MB
Current: Memory used: 2864.01 MB

minimal_surface Passed Core Comparison ✅

Original model has 11 species.
Test model has 11 species. ✅
Original model has 3 reactions.
Test model has 3 reactions. ✅

minimal_surface Passed Edge Comparison ✅

Original model has 38 species.
Test model has 38 species. ✅
Original model has 38 reactions.
Test model has 38 reactions. ✅

Observables Test Case: minimal_surface Comparison

✅ All Observables varied by less than 0.500 on average between old model and new model in all conditions!

minimal_surface Passed Observable Testing ✅

beep boop this comment was written by a bot 🤖

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants