fix bug where relative paths are passed on and then don't get properl…

…y linked when the directory changes
ReactionMechanismGenerator · Dec 4, 2024 · ef9fd03 · ef9fd03
1 parent 84a1cdc
commit ef9fd03
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/rmgpy/tools/fluxdiagram.py b/rmgpy/tools/fluxdiagram.py
@@ -540,7 +540,7 @@ def create_flux_diagram(input_file, chemkin_file, species_dict, save_path=None,
     a species_dict txt file, plus an optional chemkin_output file.
     """
     if species_path is None:
-        species_path = os.path.join(os.path.dirname(input_file), 'species')
+        species_path = os.path.join(os.path.dirname(os.path.abspath(input_file)), 'species')
         generate_images = True
     else:
         generate_images = False