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21 changes: 1 addition & 20 deletions _sources/users/rmg/installation/anacondaDeveloper.rst.txt
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Installation by Source Using Anaconda Environment for Unix-based Systems: Linux and Mac OSX
*******************************************************************************************

#. Install the `conda` package manager, if you do not already have it (or Anaconda).
Select one of the following options:

a. Users of Fedora Linux and Red Hat derivatives (RHEL, CentOS Stream) may install from the official repositories and EPEL, respectively, with the command ::

sudo dnf install conda

b. All other users, download and install `Miniconda <https://docs.conda.io/en/latest/miniconda.html>`_.

The download will be a .sh file with a name like ``Miniconda3-latest-Linux-x86_64.sh``.
Open a terminal in the same directory as this file, and type the following to install Conda
(replace the name of your .sh file below). ::

bash Miniconda3-latest-Linux-x86_64.sh

**When prompted to append Anaconda to your PATH, select or type Yes**.
Install the Conda folder inside your home directory
(typically ``/home/YourUsername/`` in Linux and ``/Users/YourUsername`` in Mac).

Note that you should reinitialize or restart your terminal in order for the changes to take effect, as the installer will tell you.
#. Install the `conda` package manager via `miniforge`, if you do not already have it (or Anaconda), by following the `Miniforge installation instructions <https://github.com/conda-forge/miniforge?tab=readme-ov-file#install>`_.

#. There are a few system-level dependencies which are required and should not be installed via Conda. These include
`Git <https://git-scm.com/>`_ for version control, `GNU Make <https://www.gnu.org/software/make/>`_, and the C and C++ compilers from the `GNU Compiler Collection (GCC) <https://gcc.gnu.org/>`_ for compiling RMG.
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21 changes: 1 addition & 20 deletions _sources/users/rmg/installation/anacondaUser.rst.txt
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Expand Up @@ -5,26 +5,7 @@ Binary Installation Using Anaconda for Unix-Based Systems: Linux and Mac OSX
****************************************************************************


#. Install the `conda` package manager, if you do not already have it (or Anaconda).
Select one of the following options:

a. Users of Fedora Linux and Red Hat derivatives (RHEL, CentOS Stream) may install from the official repositories and EPEL, respectively, with the command ::

sudo dnf install conda

b. All other users, download and install `Miniconda <https://docs.conda.io/en/latest/miniconda.html>`_.

The download will be a .sh file with a name like ``Miniconda3-latest-Linux-x86_64.sh``.
Open a terminal in the same directory as this file, and type the following to install Conda
(replace the name of your .sh file below). ::

bash Miniconda3-latest-Linux-x86_64.sh

**When prompted to append Anaconda to your PATH, select or type Yes**.
Install the Conda folder inside your home directory
(typically ``/home/YourUsername/`` in Linux and ``/Users/YourUsername`` in Mac).

Note that you should reinitialize or restart your terminal in order for the changes to take effect, as the installer will tell you.
#. Install the `conda` package manager via `miniforge`, if you do not already have it (or Anaconda), by following the `Miniforge installation instructions <https://github.com/conda-forge/miniforge?tab=readme-ov-file#install>`_.

#. Install both RMG and the RMG-database binaries through the terminal. Dependencies will be installed automatically. It is safest to make a new conda environment for RMG and its dependencies. Type the following command into the terminal to create the new environment named 'rmg_env' containing the latest stable version of the RMG program and its database. ::

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2 changes: 1 addition & 1 deletion searchindex.js

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23 changes: 1 addition & 22 deletions users/rmg/installation/anacondaDeveloper.html
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Expand Up @@ -63,28 +63,7 @@ <h3>Navigation</h3>
<section id="installation-by-source-using-anaconda-environment-for-unix-based-systems-linux-and-mac-osx">
<span id="anacondadeveloper"></span><h1><span class="section-number">3.3.1. </span>Installation by Source Using Anaconda Environment for Unix-based Systems: Linux and Mac OSX<a class="headerlink" href="#installation-by-source-using-anaconda-environment-for-unix-based-systems-linux-and-mac-osx" title="Permalink to this heading"></a></h1>
<ol class="arabic">
<li><p>Install the <cite>conda</cite> package manager, if you do not already have it (or Anaconda).
Select one of the following options:</p>
<ol class="loweralpha">
<li><p>Users of Fedora Linux and Red Hat derivatives (RHEL, CentOS Stream) may install from the official repositories and EPEL, respectively, with the command</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">dnf</span> <span class="n">install</span> <span class="n">conda</span>
</pre></div>
</div>
</li>
<li><p>All other users, download and install <a class="reference external" href="https://docs.conda.io/en/latest/miniconda.html">Miniconda</a>.</p>
<p>The download will be a .sh file with a name like <code class="docutils literal notranslate"><span class="pre">Miniconda3-latest-Linux-x86_64.sh</span></code>.
Open a terminal in the same directory as this file, and type the following to install Conda
(replace the name of your .sh file below).</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">bash</span> <span class="n">Miniconda3</span><span class="o">-</span><span class="n">latest</span><span class="o">-</span><span class="n">Linux</span><span class="o">-</span><span class="n">x86_64</span><span class="o">.</span><span class="n">sh</span>
</pre></div>
</div>
<p><strong>When prompted to append Anaconda to your PATH, select or type Yes</strong>.
Install the Conda folder inside your home directory
(typically <code class="docutils literal notranslate"><span class="pre">/home/YourUsername/</span></code> in Linux and <code class="docutils literal notranslate"><span class="pre">/Users/YourUsername</span></code> in Mac).</p>
<p>Note that you should reinitialize or restart your terminal in order for the changes to take effect, as the installer will tell you.</p>
</li>
</ol>
</li>
<li><p>Install the <cite>conda</cite> package manager via <cite>miniforge</cite>, if you do not already have it (or Anaconda), by following the <a class="reference external" href="https://github.com/conda-forge/miniforge?tab=readme-ov-file#install">Miniforge installation instructions</a>.</p></li>
<li><p>There are a few system-level dependencies which are required and should not be installed via Conda. These include
<a class="reference external" href="https://git-scm.com/">Git</a> for version control, <a class="reference external" href="https://www.gnu.org/software/make/">GNU Make</a>, and the C and C++ compilers from the <a class="reference external" href="https://gcc.gnu.org/">GNU Compiler Collection (GCC)</a> for compiling RMG.</p>
<p>For Linux users, you can check whether these are already installed by simply calling them via the command line, which
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23 changes: 1 addition & 22 deletions users/rmg/installation/anacondaUser.html
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Expand Up @@ -63,28 +63,7 @@ <h3>Navigation</h3>
<section id="binary-installation-using-anaconda-for-unix-based-systems-linux-and-mac-osx">
<span id="anacondauser"></span><h1><span class="section-number">3.2.1. </span>Binary Installation Using Anaconda for Unix-Based Systems: Linux and Mac OSX<a class="headerlink" href="#binary-installation-using-anaconda-for-unix-based-systems-linux-and-mac-osx" title="Permalink to this heading"></a></h1>
<ol class="arabic">
<li><p>Install the <cite>conda</cite> package manager, if you do not already have it (or Anaconda).
Select one of the following options:</p>
<ol class="loweralpha">
<li><p>Users of Fedora Linux and Red Hat derivatives (RHEL, CentOS Stream) may install from the official repositories and EPEL, respectively, with the command</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">sudo</span> <span class="n">dnf</span> <span class="n">install</span> <span class="n">conda</span>
</pre></div>
</div>
</li>
<li><p>All other users, download and install <a class="reference external" href="https://docs.conda.io/en/latest/miniconda.html">Miniconda</a>.</p>
<p>The download will be a .sh file with a name like <code class="docutils literal notranslate"><span class="pre">Miniconda3-latest-Linux-x86_64.sh</span></code>.
Open a terminal in the same directory as this file, and type the following to install Conda
(replace the name of your .sh file below).</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">bash</span> <span class="n">Miniconda3</span><span class="o">-</span><span class="n">latest</span><span class="o">-</span><span class="n">Linux</span><span class="o">-</span><span class="n">x86_64</span><span class="o">.</span><span class="n">sh</span>
</pre></div>
</div>
<p><strong>When prompted to append Anaconda to your PATH, select or type Yes</strong>.
Install the Conda folder inside your home directory
(typically <code class="docutils literal notranslate"><span class="pre">/home/YourUsername/</span></code> in Linux and <code class="docutils literal notranslate"><span class="pre">/Users/YourUsername</span></code> in Mac).</p>
<p>Note that you should reinitialize or restart your terminal in order for the changes to take effect, as the installer will tell you.</p>
</li>
</ol>
</li>
<li><p>Install the <cite>conda</cite> package manager via <cite>miniforge</cite>, if you do not already have it (or Anaconda), by following the <a class="reference external" href="https://github.com/conda-forge/miniforge?tab=readme-ov-file#install">Miniforge installation instructions</a>.</p></li>
<li><p>Install both RMG and the RMG-database binaries through the terminal. Dependencies will be installed automatically. It is safest to make a new conda environment for RMG and its dependencies. Type the following command into the terminal to create the new environment named ‘rmg_env’ containing the latest stable version of the RMG program and its database.</p>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">conda</span> <span class="n">create</span> <span class="o">-</span><span class="n">c</span> <span class="n">defaults</span> <span class="o">-</span><span class="n">c</span> <span class="n">rmg</span> <span class="o">-</span><span class="n">c</span> <span class="n">rdkit</span> <span class="o">-</span><span class="n">c</span> <span class="n">cantera</span> <span class="o">-</span><span class="n">c</span> <span class="n">pytorch</span> <span class="o">-</span><span class="n">c</span> <span class="n">conda</span><span class="o">-</span><span class="n">forge</span> <span class="o">--</span><span class="n">name</span> <span class="n">rmg_env</span> <span class="n">rmg</span> <span class="n">rmgdatabase</span>
</pre></div>
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