Skip to content

Commit

Permalink
deploy: 6f391c0
Browse files Browse the repository at this point in the history
  • Loading branch information
enryH committed Sep 4, 2024
1 parent e7702ba commit feb02fd
Show file tree
Hide file tree
Showing 351 changed files with 61,378 additions and 62,749 deletions.
2 changes: 1 addition & 1 deletion .buildinfo
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: d5c4bbf029b60c897b70e406f0d5977b
config: c95718f9512f4ad17657adceb36a1652
tags: 645f666f9bcd5a90fca523b33c5a78b7
Binary file modified .doctrees/01_0_split_data.doctree
Binary file not shown.
Binary file modified .doctrees/01_0_transform_data_to_wide_format.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_CF.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_DAE.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_KNN.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_KNN5.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_Median.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_BPCA.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_COLMEDIAN.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_IMPSEQ.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_IMPSEQROB.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_IRM.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_KNN_IMPUTE.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_LLS.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_MINDET.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_MINIMUM.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_MINPROB.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_MLE.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_MSIMPUTE.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_MSIMPUTE_MNAR.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_PI.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_QRILC.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_RF.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_ROWMEDIAN.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_SVDMETHOD.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_TRKNN.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_NAGuideR_ZERO.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_train_VAE.doctree
Binary file not shown.
Binary file modified .doctrees/01_1_transfer_NAGuideR_pred.doctree
Binary file not shown.
Binary file modified .doctrees/01_2_performance_plots.doctree
Binary file not shown.
Binary file modified .doctrees/diff_analysis/AD/10_4_ald_compare_single_pg.doctree
Binary file not shown.
Binary file not shown.
Binary file modified .doctrees/diff_analysis/AD/PI_vs_CF/10_3_ald_ml_new_feat.doctree
Binary file not shown.
Binary file not shown.
Binary file modified .doctrees/diff_analysis/AD/PI_vs_DAE/10_3_ald_ml_new_feat.doctree
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file modified .doctrees/diff_analysis/AD/PI_vs_QRILC/10_3_ald_ml_new_feat.doctree
Binary file not shown.
Binary file not shown.
Binary file modified .doctrees/diff_analysis/AD/PI_vs_RF/10_3_ald_ml_new_feat.doctree
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file modified .doctrees/environment.pickle
Binary file not shown.
Binary file modified .doctrees/index.doctree
Binary file not shown.
116 changes: 58 additions & 58 deletions 01_0_split_data.html

Large diffs are not rendered by default.

76 changes: 38 additions & 38 deletions 01_0_transform_data_to_wide_format.html
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>Transfer data for NAGuideR format &#8212; pimms_workflow 0.1.dev1+g80f9ade documentation</title>
<title>Transfer data for NAGuideR format &#8212; pimms_workflow 0.1.dev1+g6f391c0 documentation</title>



Expand Down Expand Up @@ -37,16 +37,16 @@
<link rel="preload" as="script" href="_static/scripts/pydata-sphinx-theme.js?digest=dfe6caa3a7d634c4db9b" />
<script src="_static/vendor/fontawesome/6.5.2/js/all.min.js?digest=dfe6caa3a7d634c4db9b"></script>

<script src="_static/documentation_options.js?v=9b9c876a"></script>
<script src="_static/documentation_options.js?v=09f12503"></script>
<script src="_static/doctools.js?v=9a2dae69"></script>
<script src="_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
<script>DOCUMENTATION_OPTIONS.pagename = '01_0_transform_data_to_wide_format';</script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Experiment 03 - Data" href="01_0_split_data.html" />
<link rel="prev" title="Comparison Workflow Notebooks" href="index.html" />
<link rel="next" title="K- Nearest Neighbors (KNN)" href="01_1_train_KNN.html" />
<link rel="prev" title="Experiment 03 - Data" href="01_0_split_data.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
</head>
Expand Down Expand Up @@ -134,7 +134,7 @@



<p class="title logo__title">pimms_workflow 0.1.dev1+g80f9ade documentation</p>
<p class="title logo__title">pimms_workflow 0.1.dev1+g6f391c0 documentation</p>

</a></div>
<div class="sidebar-primary-item">
Expand All @@ -160,41 +160,41 @@
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Split creation and data handling</span></p>
<ul class="current nav bd-sidenav">
<li class="toctree-l1 current active"><a class="current reference internal" href="#">Transfer data for NAGuideR format</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_0_split_data.html">Experiment 03 - Data</a></li>
<li class="toctree-l1 current active"><a class="current reference internal" href="#">Transfer data for NAGuideR format</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">PIMMS models</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="01_1_train_DAE.html">DAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_KNN.html">KNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_KNN5.html">KNN5</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_VAE.html">VAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_KNN.html">KNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_Median.html">Median</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_CF.html">CF</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_DAE.html">DAE</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">R models</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_RF.html">RF</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MINIMUM.html">MINIMUM</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_COLMEDIAN.html">COLMEDIAN</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_SVDMETHOD.html">SVDMETHOD</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MINDET.html">MINDET</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_SVDMETHOD.html">SVDMETHOD</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_TRKNN.html">TRKNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MSIMPUTE_MNAR.html">MNAR</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_LLS.html">LLS</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_BPCA.html">BPCA</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_ZERO.html">ZERO</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MLE.html">MLE</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_PI.html">PI</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_RF.html">RF</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_BPCA.html">BPCA</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_KNN_IMPUTE.html">IMPUTE</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_IMPSEQROB.html">IMPSEQROB</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_IRM.html">IRM</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_TRKNN.html">TRKNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MINPROB.html">MINPROB</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_QRILC.html">QRILC</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_IMPSEQ.html">IMPSEQ</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_KNN_IMPUTE.html">IMPUTE</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_QRILC.html">QRILC</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MSIMPUTE.html">MSIMPUTE</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MINPROB.html">MINPROB</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_PI.html">PI</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_LLS.html">LLS</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_IRM.html">IRM</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_COLMEDIAN.html">COLMEDIAN</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_ROWMEDIAN.html">ROWMEDIAN</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_transfer_NAGuideR_pred.html">transfer NAGuideR pred</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_ZERO.html">ZERO</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MSIMPUTE.html">MSIMPUTE</a></li>
<li class="toctree-l1"><a class="reference internal" href="01_1_train_NAGuideR_MINIMUM.html">MINIMUM</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Imputation model comparison</span></p>
<ul class="nav bd-sidenav">
Expand All @@ -206,36 +206,36 @@
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_PI.html">PI</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_RF.html">RF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_CF.html">CF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_DAE.html">DAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_None.html">None</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_TRKNN.html">TRKNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_VAE.html">VAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_Median.html">Median</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_QRILC.html">QRILC</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_TRKNN.html">TRKNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_VAE.html">VAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_DAE.html">DAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/scores/10_1_ald_diff_analysis_None.html">None</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Compare ANCOVAs</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_QRILC/10_2_ald_compare_methods.html">PI vs QRILC</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_RF/10_2_ald_compare_methods.html">PI vs RF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_CF/10_2_ald_compare_methods.html">PI vs CF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_VAE/10_2_ald_compare_methods.html">PI vs VAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_DAE/10_2_ald_compare_methods.html">PI vs DAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_CF/10_2_ald_compare_methods.html">PI vs CF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_TRKNN/10_2_ald_compare_methods.html">PI vs TRKNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_Median/10_2_ald_compare_methods.html">PI vs Median</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_QRILC/10_2_ald_compare_methods.html">PI vs QRILC</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_RF/10_2_ald_compare_methods.html">PI vs RF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_TRKNN/10_2_ald_compare_methods.html">PI vs TRKNN</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Compare single differential analysis</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/10_4_ald_compare_single_pg.html">Compare single features</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Logistic regression models</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_QRILC/10_3_ald_ml_new_feat.html">PI vs QRILC</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_RF/10_3_ald_ml_new_feat.html">PI vs RF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_CF/10_3_ald_ml_new_feat.html">PI vs CF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_VAE/10_3_ald_ml_new_feat.html">PI vs VAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_DAE/10_3_ald_ml_new_feat.html">PI vs DAE</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_CF/10_3_ald_ml_new_feat.html">PI vs CF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_TRKNN/10_3_ald_ml_new_feat.html">PI vs TRKNN</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_Median/10_3_ald_ml_new_feat.html">PI vs Median</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_QRILC/10_3_ald_ml_new_feat.html">PI vs QRILC</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_RF/10_3_ald_ml_new_feat.html">PI vs RF</a></li>
<li class="toctree-l1"><a class="reference internal" href="diff_analysis/AD/PI_vs_TRKNN/10_3_ald_ml_new_feat.html">PI vs TRKNN</a></li>
</ul>

</div>
Expand Down Expand Up @@ -1020,20 +1020,20 @@ <h1>Transfer data for NAGuideR format<a class="headerlink" href="#transfer-data-

<div class="prev-next-area">
<a class="left-prev"
href="index.html"
href="01_0_split_data.html"
title="previous page">
<i class="fa-solid fa-angle-left"></i>
<div class="prev-next-info">
<p class="prev-next-subtitle">previous</p>
<p class="prev-next-title">Comparison Workflow Notebooks</p>
<p class="prev-next-title">Experiment 03 - Data</p>
</div>
</a>
<a class="right-next"
href="01_0_split_data.html"
href="01_1_train_KNN.html"
title="next page">
<div class="prev-next-info">
<p class="prev-next-subtitle">next</p>
<p class="prev-next-title">Experiment 03 - Data</p>
<p class="prev-next-title">K- Nearest Neighbors (KNN)</p>
</div>
<i class="fa-solid fa-angle-right"></i>
</a>
Expand Down
Loading

0 comments on commit feb02fd

Please sign in to comment.