deploy: 6986e38

01_1_train_CF.html

@@ -995,8 +995,8 @@ <h3>Training<a class="headerlink" href="#training" title="Link to this heading">
         background: #F44336;
     }
 </style>
-</div><div class="output text_html"></div><div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>suggested_lr.valley = 0.00363
-No improvement since epoch 14: early stopping
+</div><div class="output text_html"></div><div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>suggested_lr.valley = 0.00302
+No improvement since epoch 16: early stopping
 pimmslearn.plotting - INFO     Saved Figures to runs/alzheimer_study/figures/collab_training
 </pre></div>
 </div>
@@ -1032,103 +1032,115 @@ <h3>Training<a class="headerlink" href="#training" title="Link to this heading">
   <tbody>
     <tr>
       <td>0</td>
-      <td>8.747909</td>
-      <td>12.859440</td>
+      <td>8.814104</td>
+      <td>13.128878</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>1</td>
-      <td>6.654764</td>
-      <td>9.486464</td>
+      <td>7.369121</td>
+      <td>10.720638</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>2</td>
-      <td>2.948493</td>
-      <td>4.132698</td>
+      <td>4.133276</td>
+      <td>5.906556</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>3</td>
-      <td>1.052907</td>
-      <td>1.399983</td>
+      <td>1.506137</td>
+      <td>2.140096</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>4</td>
-      <td>0.623671</td>
-      <td>0.807752</td>
+      <td>0.743539</td>
+      <td>0.973608</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>5</td>
-      <td>0.549289</td>
-      <td>0.733074</td>
+      <td>0.587066</td>
+      <td>0.755412</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>6</td>
-      <td>0.533560</td>
-      <td>0.707654</td>
+      <td>0.556484</td>
+      <td>0.732123</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>7</td>
-      <td>0.499005</td>
-      <td>0.660308</td>
+      <td>0.537058</td>
+      <td>0.720814</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>8</td>
-      <td>0.437432</td>
-      <td>0.593108</td>
+      <td>0.507210</td>
+      <td>0.676726</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>9</td>
-      <td>0.398629</td>
-      <td>0.551652</td>
+      <td>0.443138</td>
+      <td>0.608785</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>10</td>
-      <td>0.372498</td>
-      <td>0.528016</td>
+      <td>0.399700</td>
+      <td>0.555031</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>11</td>
-      <td>0.335744</td>
-      <td>0.503452</td>
+      <td>0.374780</td>
+      <td>0.526317</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>12</td>
-      <td>0.312101</td>
-      <td>0.482361</td>
+      <td>0.338443</td>
+      <td>0.493817</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>13</td>
-      <td>0.279712</td>
-      <td>0.463406</td>
+      <td>0.311499</td>
+      <td>0.481201</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>14</td>
-      <td>0.248190</td>
-      <td>0.450243</td>
+      <td>0.269313</td>
+      <td>0.469649</td>
       <td>00:01</td>
     </tr>
     <tr>
       <td>15</td>
-      <td>0.225793</td>
-      <td>0.459961</td>
+      <td>0.242396</td>
+      <td>0.451266</td>
+      <td>00:01</td>
+    </tr>
+    <tr>
+      <td>16</td>
+      <td>0.225264</td>
+      <td>0.451225</td>
+      <td>00:01</td>
+    </tr>
+    <tr>
+      <td>17</td>
+      <td>0.209114</td>
+      <td>0.453346</td>
       <td>00:01</td>
     </tr>
   </tbody>
-</table></div><img alt="_images/35a86025002eb74c5317620c50325302adafca83b8c4ea670be1974de3c3ac0e.png" src="_images/35a86025002eb74c5317620c50325302adafca83b8c4ea670be1974de3c3ac0e.png" />
-<img alt="_images/6b406225b0140bc164b8b079fecd616eadf2578c4dae8629756aae7c29757541.png" src="_images/6b406225b0140bc164b8b079fecd616eadf2578c4dae8629756aae7c29757541.png" />
+</table></div><img alt="_images/743bdf649621e841495563206978f8148ccc7f8b4dce6fe4907bb1b9bb34ff21.png" src="_images/743bdf649621e841495563206978f8148ccc7f8b4dce6fe4907bb1b9bb34ff21.png" />
+<img alt="_images/0105a1d3c146be2d09bd2da3aafe458d061ac476f99e1bb1ac2043ddc482f318.png" src="_images/0105a1d3c146be2d09bd2da3aafe458d061ac476f99e1bb1ac2043ddc482f318.png" />
 </div>
 </div>
 </section>
@@ -1203,31 +1215,31 @@ <h3>Predictions<a class="headerlink" href="#predictions" title="Link to this hea
       <th>Sample_158</th>
       <th>Q9UN70;Q9UN70-2</th>
       <td>14.630</td>
-      <td>15.749</td>
+      <td>15.681</td>
     </tr>
     <tr>
       <th>Sample_050</th>
       <th>Q9Y287</th>
       <td>15.755</td>
-      <td>16.759</td>
+      <td>17.012</td>
     </tr>
     <tr>
       <th>Sample_107</th>
       <th>Q8N475;Q8N475-2</th>
       <td>15.029</td>
-      <td>13.832</td>
+      <td>13.459</td>
     </tr>
     <tr>
       <th>Sample_199</th>
       <th>P06307</th>
       <td>19.376</td>
-      <td>19.383</td>
+      <td>19.289</td>
     </tr>
     <tr>
       <th>Sample_067</th>
       <th>Q5VUB5</th>
       <td>15.309</td>
-      <td>15.420</td>
+      <td>14.673</td>
     </tr>
     <tr>
       <th>...</th>
@@ -1239,31 +1251,31 @@ <h3>Predictions<a class="headerlink" href="#predictions" title="Link to this hea
       <th>Sample_111</th>
       <th>F6SYF8;Q9UBP4</th>
       <td>22.822</td>
-      <td>23.058</td>
+      <td>23.262</td>
     </tr>
     <tr>
       <th>Sample_002</th>
       <th>A0A0A0MT36</th>
       <td>18.165</td>
-      <td>15.858</td>
+      <td>16.665</td>
     </tr>
     <tr>
       <th>Sample_049</th>
       <th>Q8WY21;Q8WY21-2;Q8WY21-3;Q8WY21-4</th>
       <td>15.525</td>
-      <td>15.548</td>
+      <td>15.563</td>
     </tr>
     <tr>
       <th>Sample_182</th>
       <th>Q8NFT8</th>
       <td>14.379</td>
-      <td>14.415</td>
+      <td>13.549</td>
     </tr>
     <tr>
       <th>Sample_123</th>
       <th>Q16853;Q16853-2</th>
       <td>14.504</td>
-      <td>14.570</td>
+      <td>14.450</td>
     </tr>
   </tbody>
 </table>
@@ -1336,27 +1348,27 @@ <h3>Predictions<a class="headerlink" href="#predictions" title="Link to this hea
       <th rowspan="5" valign="top">Sample_000</th>
       <th>A0A075B6P5;P01615</th>
       <td>17.016</td>
-      <td>17.445</td>
+      <td>17.704</td>
     </tr>
     <tr>
       <th>A0A087X089;Q16627;Q16627-2</th>
       <td>18.280</td>
-      <td>18.038</td>
+      <td>18.057</td>
     </tr>
     <tr>
       <th>A0A0B4J2B5;S4R460</th>
       <td>21.735</td>
-      <td>22.715</td>
+      <td>22.764</td>
     </tr>
     <tr>
       <th>A0A140T971;O95865;Q5SRR8;Q5SSV3</th>
       <td>14.603</td>
-      <td>15.496</td>
+      <td>15.346</td>
     </tr>
     <tr>
       <th>A0A140TA33;A0A140TA41;A0A140TA52;P22105;P22105-3;P22105-4</th>
       <td>16.143</td>
-      <td>16.393</td>
+      <td>16.607</td>
     </tr>
     <tr>
       <th>...</th>
@@ -1368,27 +1380,27 @@ <h3>Predictions<a class="headerlink" href="#predictions" title="Link to this hea
       <th rowspan="5" valign="top">Sample_209</th>
       <th>Q96ID5</th>
       <td>16.074</td>
-      <td>16.045</td>
+      <td>15.891</td>
     </tr>
     <tr>
       <th>Q9H492;Q9H492-2</th>
       <td>13.173</td>
-      <td>13.198</td>
+      <td>13.257</td>
     </tr>
     <tr>
       <th>Q9HC57</th>
       <td>14.207</td>
-      <td>13.580</td>
+      <td>13.903</td>
     </tr>
     <tr>
       <th>Q9NPH3;Q9NPH3-2;Q9NPH3-5</th>
       <td>14.962</td>
-      <td>15.193</td>
+      <td>15.135</td>
     </tr>
     <tr>
       <th>Q9UGM5;Q9UGM5-2</th>
       <td>16.871</td>
-      <td>16.246</td>
+      <td>16.185</td>
     </tr>
   </tbody>
 </table>
@@ -1680,8 +1692,8 @@ <h3>Validation data<a class="headerlink" href="#validation-data" title="Link to
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Selected as truth to compare to: observed
 </pre></div>
 </div>
-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>{&#39;CF&#39;: {&#39;MSE&#39;: 0.4599606590248262,
-  &#39;MAE&#39;: 0.45681855349448397,
+<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>{&#39;CF&#39;: {&#39;MSE&#39;: 0.45334548766145794,
+  &#39;MAE&#39;: 0.45437877427810675,
   &#39;N&#39;: 12600,
   &#39;prop&#39;: 1.0}}
 </pre></div>
@@ -1705,8 +1717,8 @@ <h3>Test Datasplit<a class="headerlink" href="#test-datasplit" title="Link to th
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Selected as truth to compare to: observed
 </pre></div>
 </div>
-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>{&#39;CF&#39;: {&#39;MSE&#39;: 0.4789038345420183,
-  &#39;MAE&#39;: 0.45842287818248656,
+<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>{&#39;CF&#39;: {&#39;MSE&#39;: 0.4845879288743355,
+  &#39;MAE&#39;: 0.4648844037570592,
   &#39;N&#39;: 12600,
   &#39;prop&#39;: 1.0}}
 </pre></div>
@@ -1764,13 +1776,13 @@ <h3>Test Datasplit<a class="headerlink" href="#test-datasplit" title="Link to th
     <tr>
       <th rowspan="4" valign="top">CF</th>
       <th>MSE</th>
-      <td>0.460</td>
-      <td>0.479</td>
+      <td>0.453</td>
+      <td>0.485</td>
     </tr>
     <tr>
       <th>MAE</th>
-      <td>0.457</td>
-      <td>0.458</td>
+      <td>0.454</td>
+      <td>0.465</td>
     </tr>
     <tr>
       <th>N</th>
@@ -1826,7 +1838,7 @@ <h2>Config<a class="headerlink" href="#config" title="Link to this heading">#</a
  &#39;batch_size&#39;: 1024,
  &#39;cuda&#39;: False,
  &#39;data&#39;: Path(&#39;runs/alzheimer_study/data&#39;),
- &#39;epoch_trained&#39;: 16,
+ &#39;epoch_trained&#39;: 18,
  &#39;epochs_max&#39;: 100,
  &#39;file_format&#39;: &#39;csv&#39;,
  &#39;fn_rawfile_metadata&#39;: &#39;https://raw.githubusercontent.com/RasmussenLab/njab/HEAD/docs/tutorial/data/alzheimer/meta.csv&#39;,