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🐛 specify python version, move ls
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enryH committed Oct 7, 2024
1 parent 442ad85 commit 057647f
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -42,6 +42,8 @@ jobs:
with:
micromamba-version: 'latest' # any version from https://github.com/mamba-org/micromamba-releases
environment-file: snakemake_env.yml
create-args: >-
python=${{ matrix.python-version }}
init-shell: >-
bash
cache-environment: true
Expand All @@ -62,13 +64,13 @@ jobs:
run: |
cd project
snakemake -p -c1 --configfile config/single_dev_dataset/example/config.yaml --use-conda -n
- name: Show current files in conda snakemake folder
run: ls -l /Users/runner/work/pimms/pimms/project/.snakemake/conda/
- name: Run demo workflow (integration test)
continue-on-error: true
run: |
cd project
snakemake -p -c4 -k --configfile config/single_dev_dataset/example/config.yaml --use-conda
- name: Show current files in conda snakemake folder
run: ls -l /Users/runner/work/pimms/pimms/project/.snakemake/conda/
- name: Run demo workflow again (in case of installation issues)
continue-on-error: true
run: |
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