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run workflow (v1) with conda envs

🐛 see if it works without MSIMPUTE packages (which fail to install) #195

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🐛 see if it works without MSIMPUTE packages (which fail to install)

🐛 see if it works without MSIMPUTE packages (which fail to install) #195

Triggered via pull request December 30, 2024 10:05
@enryHenryH
synchronize #85
fix_msimpute
Status Failure
Total duration 11m 11s
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ci_workflow.yaml

on: pull_request
Matrix: run-integration-tests-with-conda-install
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3 errors and 6 warnings
ubuntu-latest - Workflow with snakemake conda envs
Process completed with exit code 1.
macos-13 - Workflow with snakemake conda envs
Process completed with exit code 1.
macos-13 - Workflow with snakemake conda envs
Process completed with exit code 1.
ubuntu-latest - Workflow with snakemake conda envs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
ubuntu-latest - Workflow with snakemake conda envs
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
ubuntu-latest - Workflow with snakemake conda envs
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
ubuntu-latest - Workflow with snakemake conda envs
/usr/share/miniconda/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)
macos-13 - Workflow with snakemake conda envs
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
macos-13 - Workflow with snakemake conda envs
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.