Making read depth linked calculation as a circular sequence and refin…

…ing other functions such as calculating Major and minor alleles based on Genotype Likelihoods
RacimoLab · Aug 19, 2024 · 88aaf08 · 88aaf08
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commit 88aaf08
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diff --git a/cython_constraint.txt b/cython_constraint.txt
@@ -0,0 +1 @@
+Cython<3
diff --git a/notebook/simGL.ipynb b/notebook/simGL.ipynb
diff --git a/simGL/__init__.py b/simGL/__init__.py
@@ -1 +1 @@
-from .simGL import incorporate_monomorphic, sim_allelereadcounts, allelereadcounts_to_GL, GL_to_Mm, allelereadcounts_to_pileup
+from .simGL import incorporate_monomorphic, sim_allelereadcounts, allelereadcounts_to_GL, GL_to_Mm, subset_GL, allelereadcounts_to_pileup
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		from .simGL import incorporate_monomorphic, sim_allelereadcounts, allelereadcounts_to_GL, GL_to_Mm, allelereadcounts_to_pileup
		from .simGL import incorporate_monomorphic, sim_allelereadcounts, allelereadcounts_to_GL, GL_to_Mm, subset_GL, allelereadcounts_to_pileup