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v0.5.0
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@tpereachamblee tpereachamblee released this 04 Mar 21:34
· 60 commits to master since this release
v0.5.0
157fabb

Added

  • Extended arcasHLA quant module with additional --LOH option which enables loss of heterozygosity (LOH) calling as a last step provided user inputs values for purity and ploidy (per our publications). Additional flags --purity and --ploidy provided to allow user to specify estimated values for each.

Fixed

  • Fixed issues causing arcasHLA quant to crash immediately when called on single-end reads.
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